View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_23 (Length: 488)
Name: NF20618_low_23
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 34760520 - 34760056
Alignment:
| Q |
1 |
ttctatcaaaagatttggaaggaaaccaaaacctgttcggagagattcaactagtagtgatcatgaggtcagtgccttcaaattcaatatcaaagtttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760520 |
ttctatcaaaagatttggaaggaaaccaaaacctgttcggagagattcaactagtagtgatcatgaggtcagtgccttcaaattcaatatcaaagtttaa |
34760421 |
T |
|
| Q |
101 |
gatatttagaaaacagtaccctcaattatattttttcacataaattggacagtaaatttcaactacaatttggttggtcaacacaattttaatatatgat |
200 |
Q |
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||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| |||| | |||||||| |||||||||| |
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| T |
34760420 |
gatatttagaaaatagtaacctcaatgatatttttacacataaatttgacagtaaatttcaacaacaatttggatggttagcacaatttgaatatatgat |
34760321 |
T |
|
| Q |
201 |
taatcatgttttaaattatggttaattgtgttttttagttgcgttaacaatccaaattgtgcattcatttacgaggaaaatctttgcctctaatttttct |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760320 |
taatcatgttgtaaattatggttaattgtgttttttagttgcgttaacaatccaaattgtgcattcatttacgaggaaaatctttgcctctaatttttct |
34760221 |
T |
|
| Q |
301 |
ttcattccccacattttctttcccagaaagaaaagaacagcactaccttaacagacagtgaagggacatcaccacttgtgtttgtttgtctcttatttgt |
400 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
34760220 |
ttcat---------------tcccagaaagaaaagaacagcactaccttaacagacagtgaagggacatcaccacttatgtttgtttgtctcttgtttgt |
34760136 |
T |
|
| Q |
401 |
tcagaaaagtaatatcaaaatcctgtattacacgagaaggatcttcttgtacctacattggttattggatgccaaacatg |
480 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760135 |
tcagaaaagtaatatcaaaatcctgaattacacgagaaggatcttcttgtacctacattggttattggatgccaaacatg |
34760056 |
T |
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