View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_24 (Length: 471)
Name: NF20618_low_24
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 6609799 - 6610142
Alignment:
| Q |
7 |
tcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtg |
106 |
Q |
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| T |
6609799 |
tcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaagttgtaatagagttgagagcacacatttg |
6609898 |
T |
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| Q |
107 |
gagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatt |
206 |
Q |
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| T |
6609899 |
gagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatt |
6609998 |
T |
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| Q |
207 |
tgttgagtttaacaaacataattagaattgtgtgtgacaataggctgtaagctgaaataatttatagaaagnnnnnnnnnnnnnncacttgttagttgtt |
306 |
Q |
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| T |
6609999 |
tgttgagtttaacaaacataattagaattgtgtgtgacaataagctgtaagctgaaataatttatagaaag----aaaaaaaaaacacttgttagttgtt |
6610094 |
T |
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| Q |
307 |
acaatagtttttatt--gagtggcagagccactataattgtcctttgt |
352 |
Q |
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| T |
6610095 |
acaatagtttttattgagagtggcagagccactataattgtcctttgt |
6610142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 6602283 - 6602465
Alignment:
| Q |
6 |
atcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagt |
105 |
Q |
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| T |
6602283 |
atcattagctatagctgacaagatattgtctttaacaattttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagt |
6602382 |
T |
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| Q |
106 |
ggagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaa |
188 |
Q |
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| T |
6602383 |
ggagtaagaaacacaagacaaaacatgaaaataaaaacatgtttgttagagacacactccatgagctgaaactatgttgacaa |
6602465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 351 - 471
Target Start/End: Original strand, 6610181 - 6610301
Alignment:
| Q |
351 |
gttaaacaattgctctaagtggcaagatgatgcagtatatgagaatattaaaaacagtatagtgcatagtttggttttatgattttgtgtggcagttaag |
450 |
Q |
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| T |
6610181 |
gttaaacaattgctctaagtggcaagatgatgcagtatatgagaatattaaaaacagtatagtgcatagtttggttttatgattttgtgtggcagttaag |
6610280 |
T |
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| Q |
451 |
aattttctttaatcttgatga |
471 |
Q |
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| T |
6610281 |
aattttctttaatcttgatga |
6610301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 6602531 - 6602588
Alignment:
| Q |
292 |
cacttgttagttgttacaatagtttttattgagtggcagagccactataattgtcctt |
349 |
Q |
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| T |
6602531 |
cacttgttaattgttaacatagtttttatagagtggcagagccactatgattgtcctt |
6602588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 6602462 - 6602519
Alignment:
| Q |
218 |
acaaacataattagaattgtgtgtgacaataggctgtaagctgaaataatttatagaa |
275 |
Q |
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| T |
6602462 |
acaaacttaattagaactttgtgtgacaataagttgtaagctgaaacaatttatagaa |
6602519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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