View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_25 (Length: 467)
Name: NF20618_low_25
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 32844280 - 32844728
Alignment:
| Q |
1 |
ttgcttttgcaactgtgcttttatttggtggttagattcgacatttctacatacattttccttctcagccaagagtctcaacctcctcgcttcagcatca |
100 |
Q |
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| T |
32844280 |
ttgcttttgcaactgtgcttttatttggtggttagattcgacatttctacatacattttccttctcagccaagagtctcaacctcctcgcttcagcatca |
32844379 |
T |
|
| Q |
101 |
gctatctcagaattacacgagttccttttgttgcttttaaaatccatgaaagaggacctcagctgaaaaccagaaacagaaccactttcaaacaattaac |
200 |
Q |
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| T |
32844380 |
gctatctcagaattacacgagttccttttgttgcttttaaaatccatgaaagaggacctcagctgaaaaccagaaacagaaccactttcaaacaattaac |
32844479 |
T |
|
| Q |
201 |
aatccaccagattgatcataatctaacattgttactattaatttcatacaaattgatagctaggaatgctgaaccatgatcaaaagaagcacatatatag |
300 |
Q |
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| T |
32844480 |
aatccaccagattgatcataatctaacattgttactattaatttcatacaaattgatagctaggaatgctgaaccatgatcaaaagaagcacatatatag |
32844579 |
T |
|
| Q |
301 |
cataccataaacatacatgtcaatttctgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaatagtataagaaacacc |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844580 |
cataccataaacatacatgtcaatatctgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaatagtataagaaacacc |
32844679 |
T |
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| Q |
401 |
ggcacataaatggacaacagatacacgacactaacaccgagacttatat |
449 |
Q |
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| T |
32844680 |
ggcacataaatggacaacagatacacgacactaacaccgagacttatat |
32844728 |
T |
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