View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_27 (Length: 449)
Name: NF20618_low_27
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 185 - 435
Target Start/End: Original strand, 48393759 - 48394009
Alignment:
| Q |
185 |
gttgcaagaaaatccggaggtagtaatatacatttgatatgataaaaggtttaaagacaatttgaattataatcatatgacatctttatgttggcttttg |
284 |
Q |
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| T |
48393759 |
gttgcaagaaaatccggaggtagtaatatacatttgatatgataaaaggtttaaagacaatttgaattataatcatatgacatctttatgttggcttttg |
48393858 |
T |
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| Q |
285 |
aaggatgttccaactggagagcttcctagaaacttgcttctatccgttgatcgacatcttgttcaaactgtagtgcctggctcaagattaacaatcgttg |
384 |
Q |
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| T |
48393859 |
aaggatgttccaactggagagcttcctagaaacttgcttctatccgttgatcgacatcttgttcaaactgtagtgcctggctcaagattaacaatcgttg |
48393958 |
T |
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| Q |
385 |
gaatctatagtatttttcaggcctccaactcttctgcatcgtgatattaat |
435 |
Q |
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| T |
48393959 |
gaatctatagtatttttcaggcctccaactcttctgcatcgtgagattaat |
48394009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 48394283 - 48394113
Alignment:
| Q |
19 |
aaaggaagcaaccaacaaggtataaagcacagaagtagtcaattaatagttggtgaacactaaattcttcatttgtaaacgcagtgggacctcgagactt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48394283 |
aaaggaagcaaccaacaaggtataaagcacagaagtagtcaattaatagttggtgaacactaacttcttcatttgtaaacgcagtgggacctcgagactt |
48394184 |
T |
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| Q |
119 |
ggcttcatttccatcttctattcctacaaccctaatataaggctgtctaactgcaactgctcctttgttgc |
189 |
Q |
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| T |
48394183 |
ggcttcatttccatcttctattcctacaaccctaatataaggctgtctaactgcaactgctcctttgttgc |
48394113 |
T |
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