View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_28 (Length: 446)
Name: NF20618_low_28
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 38715588 - 38716021
Alignment:
| Q |
1 |
ttccttttataatattttcaagttttagtgagatgactttaagaaaaagactttacaacaaaaacaaatttt-gtactgaattctaattaaagaattaat |
99 |
Q |
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| T |
38715588 |
ttccttttataatattttcaagttttagtgagatgactttaagaaaaagactttacaacagaaacaaatttttgtactgaattctaattaaagaattaat |
38715687 |
T |
|
| Q |
100 |
ttataaacacaccaattatggatttacattgtctgcgataatttaattgtcatccataatttcgtctggagtgtttggattaacgatgagattaacaaaa |
199 |
Q |
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| T |
38715688 |
ttataaacacatcaattatggatttacattgtctgtgataattcaattgtcatccataatttcgtctgaagtgtttggattaacgatgagattaacaaaa |
38715787 |
T |
|
| Q |
200 |
taaggtaaaccaccataatttcgtcaaaaattatatcgtaattttgtcgatgttatggttaaaccaaacatacaataaatccataataaatgtatattca |
299 |
Q |
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| T |
38715788 |
taaggtaaaccaccataatttcgtcaaaaattatatcgtaattttgtcgatgttatggttaaaccaaacatacaataaatccataataaatgtatattca |
38715887 |
T |
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| Q |
300 |
gaataataagtgaacttcagagcagaatctaccttacctgagctcaaacagaaggagcagaaggatcattttcacctcattctctctctgatccatagtt |
399 |
Q |
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| T |
38715888 |
gaataataagtgaacttcagagcagaatctaccttacatgagctcaaacagaaggagcaaaaggatcattttcacctcattctctctctggtccatagtt |
38715987 |
T |
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| Q |
400 |
gtttcccaagtaaaaagcatacaaacacattctg |
433 |
Q |
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| T |
38715988 |
gtttcccaagtaaaaagcatacaaacacattctg |
38716021 |
T |
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