View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_29 (Length: 445)

Name: NF20618_low_29
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_29
NF20618_low_29
[»] chr7 (13 HSPs)
chr7 (144-429)||(22819994-22820279)
chr7 (144-429)||(4615705-4615990)
chr7 (210-414)||(17053002-17053206)
chr7 (32-134)||(33973144-33973246)
chr7 (32-133)||(27243958-27244058)
chr7 (248-424)||(45201221-45201397)
chr7 (32-135)||(5609415-5609518)
chr7 (308-425)||(9599743-9599860)
chr7 (308-425)||(9827314-9827431)
chr7 (36-144)||(5086644-5086752)
chr7 (37-133)||(21824437-21824533)
chr7 (373-415)||(19048186-19048228)
chr7 (37-94)||(9697283-9697340)
[»] chr6 (9 HSPs)
chr6 (144-429)||(29055097-29055382)
chr6 (29-144)||(11986264-11986379)
chr6 (36-144)||(21698759-21698867)
chr6 (32-135)||(10516212-10516315)
chr6 (33-144)||(1638176-1638286)
chr6 (36-144)||(30063575-30063683)
chr6 (38-144)||(1641209-1641314)
chr6 (332-409)||(24957134-24957211)
chr6 (29-129)||(33169571-33169671)
[»] chr4 (8 HSPs)
chr4 (144-429)||(9776960-9777244)
chr4 (32-144)||(25553298-25553410)
chr4 (308-413)||(48804677-48804782)
chr4 (32-132)||(15065966-15066066)
chr4 (72-144)||(17459449-17459521)
chr4 (212-423)||(2601568-2601778)
chr4 (29-94)||(13200939-13201004)
chr4 (37-94)||(13563660-13563717)
[»] chr1 (12 HSPs)
chr1 (144-429)||(3073328-3073613)
chr1 (156-414)||(21404431-21404689)
chr1 (156-414)||(22192070-22192328)
chr1 (243-415)||(31874313-31874485)
chr1 (33-144)||(4180020-4180131)
chr1 (32-132)||(38532611-38532711)
chr1 (32-122)||(27527366-27527456)
chr1 (29-144)||(44464593-44464708)
chr1 (76-144)||(11644798-11644866)
chr1 (33-144)||(25594732-25594843)
chr1 (51-144)||(21182687-21182780)
chr1 (72-132)||(22161812-22161872)
[»] chr3 (13 HSPs)
chr3 (156-414)||(31546964-31547222)
chr3 (156-414)||(31778246-31778504)
chr3 (156-414)||(44887497-44887755)
chr3 (38-144)||(9734362-9734468)
chr3 (32-144)||(8968292-8968404)
chr3 (41-144)||(26307424-26307527)
chr3 (32-132)||(2651713-2651813)
chr3 (34-144)||(2439539-2439649)
chr3 (32-144)||(14504025-14504137)
chr3 (256-390)||(26254073-26254208)
chr3 (308-408)||(21496009-21496109)
chr3 (37-133)||(34935149-34935245)
chr3 (72-144)||(46091985-46092057)
[»] chr5 (7 HSPs)
chr5 (144-392)||(17757584-17757831)
chr5 (32-144)||(20587686-20587798)
chr5 (32-144)||(20706165-20706277)
chr5 (36-144)||(19609065-19609173)
chr5 (32-132)||(42765340-42765440)
chr5 (32-132)||(36961880-36961980)
chr5 (72-144)||(11619117-11619189)
[»] chr2 (6 HSPs)
chr2 (38-144)||(21084909-21085015)
chr2 (32-144)||(34071270-34071382)
chr2 (36-144)||(31426498-31426606)
chr2 (32-132)||(27072423-27072523)
chr2 (72-132)||(20471237-20471297)
chr2 (379-415)||(4222852-4222888)
[»] chr8 (8 HSPs)
chr8 (37-144)||(25732250-25732357)
chr8 (32-118)||(22974831-22974918)
chr8 (300-429)||(3965000-3965129)
chr8 (37-144)||(28161867-28161974)
chr8 (41-144)||(7995234-7995337)
chr8 (300-412)||(28994583-28994695)
chr8 (204-271)||(43613401-43613468)
chr8 (374-414)||(31263440-31263480)
[»] scaffold0114 (1 HSPs)
scaffold0114 (37-144)||(11443-11550)
[»] scaffold0445 (1 HSPs)
scaffold0445 (37-134)||(13932-14029)
[»] scaffold1689 (1 HSPs)
scaffold1689 (37-133)||(973-1069)
[»] scaffold0009 (1 HSPs)
scaffold0009 (32-116)||(215522-215606)
[»] scaffold0007 (1 HSPs)
scaffold0007 (32-120)||(234619-234707)
[»] scaffold0388 (1 HSPs)
scaffold0388 (53-144)||(14381-14472)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 144 - 429
Target Start/End: Original strand, 22819994 - 22820279
Alignment:
Q  144 agcctttctgtttgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctat 243  Q
    |||| ||||||||||  |||||||||||||||||  |||||||||||||| ||||||| ||||||||  |||||||||||||||| |||||||| |||||    
T  22819994 agcccttctgtttgttagatcatttttatcagttcgtgtattccgcaggtccatctcgttctatacgtactttcatgcaacttatttggttgtgttctat 22820093  T
Q  244 gtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 343  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22820094 gtgggttctgtggaatgaaagaaacagcagggtcttcaaaaatagggaacacactgttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 22820193  T
Q  344 atgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggcgttagctagtttgt 429  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||    
T  22820194 atgaaggctactaatatttctattcgtaataattttcatatgtggtgttcaagcccttttgtttgtttgggcattggctagtttgt 22820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 144 - 429
Target Start/End: Original strand, 4615705 - 4615990
Alignment:
Q  144 agcctttctgtttgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctat 243  Q
    ||||||| ||| |||| |||||||||||||||||| |||||||||||||||| || ||  ||||  |||||||||||||||||||||||||||||||| |    
T  4615705 agcctttttgtgtgtcagatcatttttatcagtttgtgtattccgcaggtgcctcccgtactatttgctctttcatgcaacttatctggttgtgctctgt 4615804  T
Q  244 gtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 343  Q
    ||||||| |||||| ||||||||||| || |||||||||||||| ||| || ||  |||||||||||||||||||||||||| | ||||| |||||||||    
T  4615805 gtgggttatgtggagtgaaagaaacagcaaggtcttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaatttcaatctttttggtgg 4615904  T
Q  344 atgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggcgttagctagtttgt 429  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||  |||||||||    
T  4615905 atgaaggctactaatatttctatccgtaataattttcatatgtggtggttaaaccattttatttgtttgggcattgactagtttgt 4615990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 210 - 414
Target Start/End: Complemental strand, 17053206 - 17053002
Alignment:
Q  210 gctctttcatgcaacttatctggttgtgctctatgtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaatt 309  Q
    |||||||| |||||||||| |||||||||||| || ||||| |||||| ||||||||||| |||||| |||||||||| ||| || ||  ||||||||||    
T  17053206 gctctttcttgcaacttatttggttgtgctctgtgggggttatgtggagtgaaagaaacagcagggtattcaaaaataaggaccataccgttcaccaatt 17053107  T
Q  310 ggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgt 409  Q
    |||||||||||||||| | || || || |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  17053106 ggtagagaaaatcaaattacagtctttctggtggatgaagactactaatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgt 17053007  T
Q  410 ttggg 414  Q
    |||||    
T  17053006 ttggg 17053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 33973246 - 33973144
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||||||| ||||||| |||||||||||||| |   |||||||||| |||||||||||||| ||| ||| || |||||||||||||||||||||||    
T  33973246 gaaagtaaattacatcatttcattaaaaatcagattggaaatacatgttgaaatatcatcaaagatctggaagctagtactagatgtggctaccttagct 33973147  T
Q  132 aaa 134  Q
    |||    
T  33973146 aaa 33973144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 27243958 - 27244058
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||||||||||||||| ||||||| | ||||||   ||||| ||||||||||||||||||||||| ||| || |||||||||||||| ||||||||    
T  27243958 gaaagtaaattatatcatttcattaaaatt-agatcggaaatacacgttggaatatcatcaaagacctggaagctagtactagatgtggctgccttagct 27244056  T
Q  132 aa 133  Q
    ||    
T  27244057 aa 27244058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 424
Target Start/End: Complemental strand, 45201397 - 45201221
Alignment:
Q  248 gttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatga 347  Q
    |||||||||| |||||||||||   ||||||||||||||| ||| || |   |||| ||||||  ||||||||||||| | || || || |||| |||||    
T  45201397 gttctgtggactgaaagaaacagtcgggtcttcaaaaatatggaccataacattcatcaattgacagagaaaatcaaattacattctttatggtagatga 45201298  T
Q  348 aggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggcgttagctag 424  Q
    ||||||||||||||| |||   | ||||||||||||||||| | |||| ||||||| ||||||| ||| || |||||    
T  45201297 aggctactaatatttttatttgtcataattttcatatgtggcgatcaaacccttttgtttgttttggcattggctag 45201221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 5609415 - 5609518
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||||||||||||||| |||||||||||||||  | |||||||  | |||||||||||||||||| ||| || |||||||||| ||| | ||||||    
T  5609415 gaaagtaaattatatcatttcattaaaaatcagatcattaatacatgcagaaatatcatcaaagacctggaagctagtactagatgtagctgctttagct 5609514  T
Q  132 aaag 135  Q
    ||||    
T  5609515 aaag 5609518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 425
Target Start/End: Complemental strand, 9599860 - 9599743
Alignment:
Q  308 ttggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttattt 407  Q
    |||||||||||  ||||| | || || || |||||||||||||||||| ||||| | ||||    ||||||||||||||||||||| ||||||||| |||    
T  9599860 ttggtagagaacgtcaaattacattctttctggtggatgaaggctactgatattacaatccggcctaattttcatatgtggtggtcgagcccttttgttt 9599761  T
Q  408 gtttgggcgttagctagt 425  Q
    || ||||| || ||||||    
T  9599760 gtgtgggcattggctagt 9599743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 425
Target Start/End: Complemental strand, 9827431 - 9827314
Alignment:
Q  308 ttggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttattt 407  Q
    |||||||||||  ||||| | || || || |||||||||||||||||| ||||| | ||||    ||||||||||||||||||||| ||||||||| |||    
T  9827431 ttggtagagaacgtcaaattacattctttctggtggatgaaggctactgatattacaatccggcctaattttcatatgtggtggtcgagcccttttgttt 9827332  T
Q  408 gtttgggcgttagctagt 425  Q
    || ||||| || ||||||    
T  9827331 gtgtgggcattggctagt 9827314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 5086752 - 5086644
Alignment:
Q  36 gtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaag 135  Q
    |||||||||||||||| |||||| |||| |||    |||||||  |||||||||||||||| ||| ||| || |||||||||||||| || |||||| ||    
T  5086752 gtaaattatatcatttcattaaatatcaaatcagaaatacatgcaggaatatcatcaaagatctggaagctagtactagatgtggctgccctagctagag 5086653  T
Q  136 catgtgcaa 144  Q
     ||||||||    
T  5086652 tatgtgcaa 5086644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 21824533 - 21824437
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaa 133  Q
    ||||||||||||||| ||||||||||| || |   ||||||| |||||||||||||||||| || ||| ||  |||| |||||||| ||||||||||    
T  21824533 taaattatatcatttcattaaaaatcaaattggaaatacatgctggaatatcatcaaagacttggaagctagaactacatgtggctgccttagctaa 21824437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 415
Target Start/End: Complemental strand, 19048228 - 19048186
Alignment:
Q  373 taattttcatatgtggtggtcaagcccttttatttgtttgggc 415  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  19048228 taattttcatatgtggtggtcaagcccttttgtttgtatgggc 19048186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 9697283 - 9697340
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaa 94  Q
    ||||||||||||||| ||||||||| | |||  | |||||||||||||| ||||||||    
T  9697283 taaattatatcatttcattaaaaattaaatcagtaatacatgttggaatctcatcaaa 9697340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 144 - 429
Target Start/End: Complemental strand, 29055382 - 29055097
Alignment:
Q  144 agcctttctgtttgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctat 243  Q
    ||||||| || ||||| ||||||||||||| |||| |||||||||||||||||| |||  ||||  |||||||||||||||||| |||||||||||||||    
T  29055382 agcctttatgcttgtcagatcatttttatctgtttgtgtattccgcaggtgcatatcgtactatttgctctttcatgcaacttacctggttgtgctctat 29055283  T
Q  244 gtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 343  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||| |  | || |||||||||    
T  29055282 gtgggttatgtggaatgaaagaaacaacagggtcttcaaaaatagggaccataatgttcaccaattggtagagaaaatcaaaatagagtctttttggtgg 29055183  T
Q  344 atgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggcgttagctagtttgt 429  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||    
T  29055182 atgaaggctactaatatttctattcataataattttcatatgtggtggtcaaacccttttatttgtttggtcattagttagtttgt 29055097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 11986379 - 11986264
Alignment:
Q  29 agggaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctacctta 128  Q
    ||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||    
T  11986379 agggaaagtaaattatatcatttcattaaaaatcaggtcggtaatacatgttggaatatcatcaaagacctggaagttagtactagacgtggctgcctta 11986280  T
Q  129 gctaaagcatgtgcaa 144  Q
    |||| |||||||||||    
T  11986279 gctagagcatgtgcaa 11986264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 21698867 - 21698759
Alignment:
Q  36 gtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaag 135  Q
    |||||||||||||||| ||||||||| |||||  | ||||||| ||||||||||||||| ||||| ||| || |||||||||||||| |||||||||||     
T  21698867 gtaaattatatcatttcattaaaaattagatcagtaatacatgctggaatatcatcaaacacctggaagctagtactagatgtggctgccttagctaaaa 21698768  T
Q  136 catgtgcaa 144  Q
    |||| ||||    
T  21698767 catgagcaa 21698759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 10516315 - 10516212
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||| ||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||  ||| || || ||||||||| | |||||| |    
T  10516315 gaaaataacttatatcattttattaaaaatcagatcggtaatatatgttggaatatcatcaaagacctagaagctagtattagatgtggttgccttagtt 10516216  T
Q  132 aaag 135  Q
    ||||    
T  10516215 aaag 10516212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 1638176 - 1638286
Alignment:
Q  33 aaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagcta 132  Q
    ||||||||||||||||||| ||||||||||| |||  | ||||||| ||||||||||||| |||  || ||| || ||||||||||||||  ||||||||    
T  1638176 aaagtaaattatatcatttcattaaaaatca-atcagtaatacatgctggaatatcatcatagatttggaagctagtactagatgtggctgtcttagcta 1638274  T
Q  133 aagcatgtgcaa 144  Q
    ||| ||||||||    
T  1638275 aagtatgtgcaa 1638286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 30063575 - 30063683
Alignment:
Q  36 gtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaag 135  Q
    |||||||||||||||| ||||||||| |||| | | ||||||| ||||||||||||||| ||||| ||| || |||| |||||||||   |||||||||     
T  30063575 gtaaattatatcatttcattaaaaattagataggtaatacatgctggaatatcatcaaacacctggaaggtagtactggatgtggctgttttagctaaaa 30063674  T
Q  136 catgtgcaa 144  Q
    |||| ||||    
T  30063675 catgagcaa 30063683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 1641209 - 1641314
Alignment:
Q  38 aaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagca 137  Q
    |||||||||||||| ||||||||||| |||  | ||||||| ||||||||||||| |||  || ||| || ||||||||||||||  ||||||||||| |    
T  1641209 aaattatatcatttcattaaaaatca-atcagtaatacatgctggaatatcatcatagatttggaagctagtactagatgtggctgtcttagctaaagta 1641307  T
Q  138 tgtgcaa 144  Q
    |||||||    
T  1641308 tgtgcaa 1641314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 409
Target Start/End: Complemental strand, 24957211 - 24957134
Alignment:
Q  332 tccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgt 409  Q
    |||| ||||||||||||| | |||||||||  ||| | | ||||||| ||||||||||||| || ||||||| |||||    
T  24957211 tcctattggtggatgaagacgactaatattaatattcgtcataatttccatatgtggtggtgaaacccttttgtttgt 24957134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 33169671 - 33169571
Alignment:
Q  29 agggaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctacctta 128  Q
    ||||||||||| ||||||||||| ||||||||| | |||  | |||||||||| ||| | ||||||||   ||||  || || ||||||||||| |||||    
T  33169671 agggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaattttatcaaagatacgtaaactagtattagatgtggctgcctta 33169572  T
Q  129 g 129  Q
    |    
T  33169571 g 33169571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 144 - 429
Target Start/End: Complemental strand, 9777244 - 9776960
Alignment:
Q  144 agcctttctgtttgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctat 243  Q
    ||||||| ||| |||| |||||||||||||||||| |||||||||||||||| |||||  |||| |||||||||||||||||||| |||||||||||| |    
T  9777244 agcctttatgtctgtcagatcatttttatcagtttgtgtattccgcaggtgcctctcgtactattcgctctttcatgcaacttatatggttgtgctctgt 9777145  T
Q  244 gtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 343  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||| || | | |||||||||||||||||||||||||| | || || |||||||||    
T  9777144 gtgggttctgtggaatgaaagaaacaacatcgtcttc-aaaatagggaccatattgttcaccaattggtagagaaaatcaaattacagtctttttggtgg 9777046  T
Q  344 atgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggcgttagctagtttgt 429  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || | ||||||||    
T  9777045 atgaagtctactaatatttctatccgtaataattttcatatgtggtggtcaagcccttttgtttgtttgagcattgggtagtttgt 9776960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 25553410 - 25553298
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    ||||| |||| ||||||||| |||| ||||||||| | | |||||||| ||||||||||||||||| || ||| || |||||||||||||| ||||||||    
T  25553410 gaaagaaaatcatatcatttcattagaaatcagattggtaatacatgtaggaatatcatcaaagacttggaagctagtactagatgtggctgccttagct 25553311  T
Q  132 aaagcatgtgcaa 144  Q
    |||||||||||||    
T  25553310 aaagcatgtgcaa 25553298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 413
Target Start/End: Complemental strand, 48804782 - 48804677
Alignment:
Q  308 ttggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttattt 407  Q
    |||||||||||| | ||| |||| || || |||||||||||||||||||||||||| || ||   |||||||||||||||||| || ||||||||| |||    
T  48804782 ttggtagagaaagttaaattgcattctttctggtggatgaaggctactaatatttccattcagcctaattttcatatgtggtgttctagcccttttgttt 48804683  T
Q  408 gtttgg 413  Q
    ||||||    
T  48804682 gtttgg 48804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 15066066 - 15065966
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||||||||||||||| |||||| |||| |||  | |||||||  |||||||||||||||||||| ||| || |||||||||||||| || |||||    
T  15066066 gaaagtaaattatatcatttcattaaagatcaaatcagtaatacatgcaggaatatcatcaaagacctggaagctagtactagatgtggctgccctagct 15065967  T
Q  132 a 132  Q
    |    
T  15065966 a 15065966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 17459521 - 17459449
Alignment:
Q  72 atacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgtgcaa 144  Q
    ||||| || |||||||||||||||||| | ||| || |||||||||||||| |||| |||| | |||||||||    
T  17459521 atacacgtaggaatatcatcaaagacccggaagctagtactagatgtggctgcctttgctagaacatgtgcaa 17459449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 423
Target Start/End: Original strand, 2601568 - 2601778
Alignment:
Q  212 tctttcatgcaacttatctggttgtgctctatgtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattgg 311  Q
    ||||| |||||||| || ||||| || | | |||| ||| |||||||||||||||| |  ||||||||| ||||||  ||  | ||  | || || |||     
T  2601568 tcttttatgcaactgatttggttatgttgtgtgtgagttatgtggaatgaaagaaatagtagggtcttcgaaaatacagagaataccatccatcatttga 2601667  T
Q  312 tagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgttt 411  Q
    |||||||| ||||| | || || ||||| ||||||||| |   |||||||||||| |    |||||||  |||||||||||||||||||||| |||||||    
T  2601668 tagagaaagtcaaattacactctttttgctggatgaagacgt-taatatttctattcggcctaattttggtatgtggtggtcaagcccttttgtttgttt 2601766  T
Q  412 gggcgttagcta 423  Q
     |||||| ||||    
T  2601767 cggcgttggcta 2601778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 13201004 - 13200939
Alignment:
Q  29 agggaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaa 94  Q
    ||||||| ||| ||||||||||| ||||||||| | |||  |||||||||||||| | ||||||||    
T  13201004 agggaaaataacttatatcatttcattaaaaattaaatcagtgatacatgttggactttcatcaaa 13200939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 13563660 - 13563717
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaa 94  Q
    ||||||||||||||| ||||||||| | |||  | |||||||||||||| ||||||||    
T  13563660 taaattatatcatttcattaaaaattaaatcagtaatacatgttggaatctcatcaaa 13563717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 144 - 429
Target Start/End: Complemental strand, 3073613 - 3073328
Alignment:
Q  144 agcctttctgtttgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctat 243  Q
    ||||||| |||||||| ||||||||||||||| || ||||||| | ||||||||| ||  |||| ||| |||||||| ||||||||| |||||||| |||    
T  3073613 agcctttatgtttgtcagatcatttttatcagattgtgtattctggaggtgcatcacgtactattcgcactttcatgtaacttatctagttgtgctatat 3073514  T
Q  244 gtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 343  Q
    ||| ||| | |||||||||||||| | ||||||||||||||||||||| || | | |||||||| ||||||||||||||||| | ||||| |||||||||    
T  3073513 gtgagttttttggaatgaaagaaagagcagggtcttcaaaaatagggaccatattgttcaccaagtggtagagaaaatcaaattacaatctttttggtgg 3073414  T
Q  344 atgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggcgttagctagtttgt 429  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||    
T  3073413 atgaaggcttctaatatttctatccgtaataattttcatatgtggtagtcaagcccttttgtttgtttgggcattggctagtttgt 3073328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 156 - 414
Target Start/End: Complemental strand, 21404689 - 21404431
Alignment:
Q  156 tgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctatgtgggttctgtg 255  Q
    |||| |||||||||||||||||| |||||||||||||||| || ||   |||  |||||||| |||||||||| |||||||||||| || ||||| ||||    
T  21404689 tgtcagatcatttttatcagtttgtgtattccgcaggtgcctcccgtaatatttgctctttcttgcaacttatttggttgtgctctgtgggggttatgtg 21404590  T
Q  256 gaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctact 355  Q
    || |||||||||||||||||||||||| |||| ||| || ||  |||| ||||||||||||||||||||||| || || ||||||||||||||| |||||    
T  21404589 gagtgaaagaaacaacagggtcttcaacaataaggaccataccgttcatcaattggtagagaaaatcaaagtacagtctttttggtggatgaagactact 21404490  T
Q  356 aatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttggg 414  Q
    ||| ||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||    
T  21404489 aatttttctatctgtaataattttcatatgtggtggttaagcccttttgtttgtttggg 21404431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 156 - 414
Target Start/End: Original strand, 22192070 - 22192328
Alignment:
Q  156 tgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctatgtgggttctgtg 255  Q
    |||| |||||||||||||||||| ||||||||||| | || || ||  | || ||||||||| |||||||||| |||||||||||| || ||||| ||||    
T  22192070 tgtcagatcatttttatcagtttgtgtattccgcaagggcctcccgtaccattcgctctttcttgcaacttatttggttgtgctctgtgggggttatgtg 22192169  T
Q  256 gaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctact 355  Q
    || ||| ||||||| |||||| |||||||||| ||| ||  |  |||| |||||||| |||||||| ||| | || || ||||||||||||||| |||||    
T  22192170 gagtgatagaaacagcagggttttcaaaaataaggaccattccgttcatcaattggtcgagaaaattaaattacagtctttttggtggatgaagactact 22192269  T
Q  356 aatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttggg 414  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||    
T  22192270 aatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgcttggg 22192328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 415
Target Start/End: Original strand, 31874313 - 31874485
Alignment:
Q  243 tgtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtg 342  Q
    |||||||  |||||||||||||||| |   || |||||||||||| |||   |||  | |||||||||||||||||| ||||| | || |||||||||||    
T  31874313 tgtgggtcatgtggaatgaaagaaatagtcggatcttcaaaaatatggagagcaccatccaccaattggtagagaaagtcaaattacattccttttggtg 31874412  T
Q  343 gatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttgggc 415  Q
    ||||||| ||| ||||||||||||      ||||||||||||||||||||| ||||||||| |||||| ||||    
T  31874413 gatgaagactattaatatttctatttgggctaattttcatatgtggtggtcgagcccttttgtttgttagggc 31874485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 4180131 - 4180020
Alignment:
Q  33 aaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagcta 132  Q
    ||||||||||||||||||| ||||||||| |||||| | ||| ||| ||||||||||||||| ||||| ||| || |||||||||||||| | |||| ||    
T  4180131 aaagtaaattatatcatttcattaaaaattagatcggtaatatatgctggaatatcatcaaacacctggaagctagtactagatgtggctgctttagtta 4180032  T
Q  133 aagcatgtgcaa 144  Q
    || |||| ||||    
T  4180031 aaacatgagcaa 4180020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 38532611 - 38532711
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||| |||||||||||||||||| |||| |||  | |||||||  ||||||||||||||||| |||||| || || |||||||||||||| |||||    
T  38532611 gaaagtaacttatatcattttattaaagatcaaatcagtaatacatgcaggaatatcatcaaagacatgtaagctagtattagatgtggctaccctagct 38532710  T
Q  132 a 132  Q
    |    
T  38532711 a 38532711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 27527456 - 27527366
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggct 122  Q
    |||||||||||||||||||| |||||| |||| |||  | |||||||  |||||||||||||||||||| ||| || ||||||||||||||    
T  27527456 gaaagtaaattatatcatttcattaaagatcaaatcagtaatacatgcaggaatatcatcaaagacctggaagctagtactagatgtggct 27527366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 44464593 - 44464708
Alignment:
Q  29 agggaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctacctta 128  Q
    ||||||| ||| ||||||||||| ||||||||| | | |  | ||| || |||||||  |||||||||  || |||||||||||||||||| || |||||    
T  44464593 agggaaaataacttatatcatttcattaaaaattaaagcagtaatatatattggaattacatcaaagatatgaaagttaatactagatgtgactgcctta 44464692  T
Q  129 gctaaagcatgtgcaa 144  Q
    |||||| |||||||||    
T  44464693 gctaaaacatgtgcaa 44464708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 11644866 - 11644798
Alignment:
Q  76 atgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgtgcaa 144  Q
    ||||||||||||||||||||| ||| |||||| || |||||||| || |||||||||||| ||| ||||    
T  11644866 atgttggaatatcatcaaagatctggaagttagtattagatgtgactgccttagctaaagtatgcgcaa 11644798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 25594732 - 25594843
Alignment:
Q  33 aaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagcta 132  Q
    ||||||||||||||||||| |||||| |||| |||    |||||||  |||||||||||||||  ||| ||| || |||||||||||||| || ||| ||    
T  25594732 aaagtaaattatatcatttcattaaatatcaaatcagaaatacatgcaggaatatcatcaaaggtctggaagctagtactagatgtggctgccctagtta 25594831  T
Q  133 aagcatgtgcaa 144  Q
     || ||||||||    
T  25594832 gagtatgtgcaa 25594843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 21182780 - 21182687
Alignment:
Q  51 ttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgtgcaa 144  Q
    ||||||||||| | |||  | ||| |||||||||||||||||||| | || ||| || |||||||||| ||| |||||| ||| ||||||||||    
T  21182780 ttattaaaaattaaatcagtaatatatgttggaatatcatcaaaggcatgaaagctagtactagatgtagctcccttagttaatgcatgtgcaa 21182687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 22161872 - 22161812
Alignment:
Q  72 atacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagcta 132  Q
    |||||||| |||||||||||||||| ||| | | || ||||||||| |||| |||||||||    
T  22161872 atacatgtaggaatatcatcaaagatctggaggctagtactagatgcggctgccttagcta 22161812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 156 - 414
Target Start/End: Complemental strand, 31547222 - 31546964
Alignment:
Q  156 tgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctatgtgggttctgtg 255  Q
    |||| ||||| |||||||||||| ||||||||||| |||| || ||  ||||  |||||||| |||||||||| |||||||||||| || ||||| ||||    
T  31547222 tgtcagatcacttttatcagtttgtgtattccgcaagtgcttcccgtactatttgctctttcttgcaacttatttggttgtgctctgtgggggttatgtg 31547123  T
Q  256 gaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctact 355  Q
    || ||||||||||| ||||||||||||||||| ||| || ||  |||||||||||||||||||||||||| | || || ||||||||||||||| |||||    
T  31547122 gagtgaaagaaacagcagggtcttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaattacagtctttttggtggatgaagactact 31547023  T
Q  356 aatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttggg 414  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  31547022 aatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgtttggg 31546964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 156 - 414
Target Start/End: Complemental strand, 31778504 - 31778246
Alignment:
Q  156 tgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctatgtgggttctgtg 255  Q
    |||| |||||||||||||||||| ||||||| ||||| || || ||  ||||  |||||||| |||||||||| ||||||||||||||| ||||| ||||    
T  31778504 tgtcagatcatttttatcagtttgtgtattctgcaggggcctcccgtactatttgctctttcttgcaacttatttggttgtgctctatgggggttatgtg 31778405  T
Q  256 gaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctact 355  Q
    || |||||||||||||||||| |||||||||| ||| || ||  |||||||||||||||||||||| ||| | || || ||| ||||||||||| |||||    
T  31778404 gagtgaaagaaacaacagggttttcaaaaataaggaccataccgttcaccaattggtagagaaaattaaattacagtcttttgggtggatgaagactact 31778305  T
Q  356 aatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttggg 414  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  31778304 aatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgtttggg 31778246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 156 - 414
Target Start/End: Complemental strand, 44887755 - 44887497
Alignment:
Q  156 tgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctatgtgggttctgtg 255  Q
    |||| |||||||||||||||||| ||||||||||||| || ||  |  ||||  |||||||| |||||||||| |||||||||||| || ||||| ||||    
T  44887755 tgtcagatcatttttatcagtttgtgtattccgcaggggcctccagtactatttgctctttcttgcaacttatttggttgtgctctgtgggggttatgtg 44887656  T
Q  256 gaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctact 355  Q
    || ||||||||||| |||||| |||||||||| ||| || ||  |||||||||||||||||||||||||| | || || ||||||||||||||| |||||    
T  44887655 gagtgaaagaaacagcagggttttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaattacagtctttttggtggatgaagactact 44887556  T
Q  356 aatatttctatccataataattttcatatgtggtggtcaagcccttttatttgtttggg 414  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  44887555 aatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgtttggg 44887497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 9734362 - 9734468
Alignment:
Q  38 aaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagca 137  Q
    |||| ||||||||| |||| ||||||||| | | ||| |||| |||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||    
T  9734362 aaatcatatcatttcattagaaatcagattggtaatatatgtaggaatatcatcaaagacctggaagctagtactagatgtggctgccttagctaaagca 9734461  T
Q  138 tgtgcaa 144  Q
    |||||||    
T  9734462 tgtgcaa 9734468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 8968292 - 8968404
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    ||||| |||| ||||||||| |||| |||||| || | | |||||||| ||||||||||||||||| || ||| || |||||||||||||| ||||||||    
T  8968292 gaaagaaaatcatatcatttcattagaaatcaaattgttaatacatgtaggaatatcatcaaagacttggaagctagtactagatgtggctgccttagct 8968391  T
Q  132 aaagcatgtgcaa 144  Q
    |||||||||||||    
T  8968392 aaagcatgtgcaa 8968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 26307527 - 26307424
Alignment:
Q  41 ttatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgt 140  Q
    ||||||||||| ||||||||| | |||  | |||||||||||||||||||||||||| || ||  || |||||||||||||| || ||||||| ||||||    
T  26307527 ttatatcatttcattaaaaattaaatcagtaatacatgttggaatatcatcaaagacatggaaactagtactagatgtggctgccctagctaatgcatgt 26307428  T
Q  141 gcaa 144  Q
    ||||    
T  26307427 gcaa 26307424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 2651713 - 2651813
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||| ||||||||||||| ||||||||||| |||  | |||||||  ||| |||||||||||||||| ||| || |||||||||||||| || |||||    
T  2651713 gaaagtgaattatatcatttcattaaaaatcaaatcagtaatacatgcaggagtatcatcaaagacctggaagctagtactagatgtggctgccctagct 2651812  T
Q  132 a 132  Q
    |    
T  2651813 a 2651813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 2439649 - 2439539
Alignment:
Q  34 aagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaa 133  Q
    |||||||||||||||||| ||||||||| | || |   ||||||| |||||||| ||||||||| || ||| || ||||| |||||||| ||||||||||    
T  2439649 aagtaaattatatcatttcattaaaaattaaattggaaatacatgctggaatattatcaaagacttggaagctagtactacatgtggctgccttagctaa 2439550  T
Q  134 agcatgtgcaa 144  Q
    || ||| ||||    
T  2439549 agtatgagcaa 2439539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 14504025 - 14504137
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||| |||||||| |||||| |||||| |||| |||  | |||||||  |||||||||||||||||| | ||| || ||||||||||||||  |||||||    
T  14504025 gaaaataaattatgtcatttcattaaagatcaaatcactaatacatgcaggaatatcatcaaagaccaggaagctagtactagatgtggctgtcttagct 14504124  T
Q  132 aaagcatgtgcaa 144  Q
    | ||| |||||||    
T  14504125 agagcgtgtgcaa 14504137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 26254208 - 26254073
Alignment:
Q  256 gaatgaaagaaacaa-cagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctac 354  Q
    ||||||||||||||  | ||||||||||||||| |||   |||  | || || |||||||||||| ||||| | || || ||||||||||||||||||||    
T  26254208 gaatgaaagaaacagtcggggtcttcaaaaataaggagagcaccatccatcagttggtagagaaagtcaaattacattctttttggtggatgaaggctac 26254109  T
Q  355 taatatttctatccataataattttcatatgtggtg 390  Q
    ||||||||| || |    ||||||||||||||||||    
T  26254108 taatatttccattcgacctaattttcatatgtggtg 26254073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 408
Target Start/End: Complemental strand, 21496109 - 21496009
Alignment:
Q  308 ttggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagcccttttattt 407  Q
    |||||||||||| ||||| | || || || |||||||||||||||||||||| ||| || |    |||||||||||||||||| || ||||||||| |||    
T  21496109 ttggtagagaaagtcaaattacattctttctggtggatgaaggctactaataattcaattcggcctaattttcatatgtggtgttcgagcccttttgttt 21496010  T
Q  408 g 408  Q
    |    
T  21496009 g 21496009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 34935245 - 34935149
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaa 133  Q
    ||||||||||||||| ||||||||| | ||||   ||||||| ||||| |||||||||  |||| ||| || ||||| |||||||| ||||||||||    
T  34935245 taaattatatcatttcattaaaaataaaatcggaaatacatgctggaacatcatcaaatgcctggaagctagtactacatgtggctgccttagctaa 34935149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 46092057 - 46091985
Alignment:
Q  72 atacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgtgcaa 144  Q
    ||||||| ||||| ||||||||||| ||| |||||| |||||||||| | |  ||||||||| | ||||||||    
T  46092057 atacatgctggaacatcatcaaagatctggaagttagtactagatgtagttgtcttagctaatgtatgtgcaa 46091985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 144 - 392
Target Start/End: Complemental strand, 17757831 - 17757584
Alignment:
Q  144 agcctttctgtttgtcggatcatttttatcagtttttgtattccgcaggtgcatctcgctctatacgctctttcatgcaacttatctggttgtgctctat 243  Q
    ||||||| ||| |||| |||||||||||||||||| |||||| ||||||||| || ||  ||||   |||||||||||||||||| |||||||||||  |    
T  17757831 agcctttttgtgtgtcagatcatttttatcagtttgtgtatttcgcaggtgcctcccgtactattttctctttcatgcaacttatttggttgtgctcg-t 17757733  T
Q  244 gtgggttctgtggaatgaaagaaacaacagggtcttcaaaaatagggaacacactcttcaccaattggtagagaaaatcaaagtgcaatccttttggtgg 343  Q
    |||||||||||||| ||||||||| | ||||||||||||||||| ||| || ||  ||||||||||| |||||||||||||| | || || |||||||||    
T  17757732 gtgggttctgtggagtgaaagaaatagcagggtcttcaaaaataaggaccataccgttcaccaattgatagagaaaatcaaattacagtctttttggtgg 17757633  T
Q  344 atgaaggctactaatatttctatccataataattttcatatgtggtggt 392  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  17757632 atgaaggttactaatatttctatccgtaataattttcatatgtggtggt 17757584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 20587798 - 20587686
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    ||||| |||| ||||||||| |||| ||||||||||| | |||||||| |||||||||||||||||||| ||| || |||||||||||||| ||||||||    
T  20587798 gaaagaaaatcatatcatttcattagaaatcagatcggtaatacatgtaggaatatcatcaaagacctggaaggtagtactagatgtggctgccttagct 20587699  T
Q  132 aaagcatgtgcaa 144  Q
    |||||||||||||    
T  20587698 aaagcatgtgcaa 20587686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 20706277 - 20706165
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||||| ||| |||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| ||| || |||||||||||||| ||||||||    
T  20706277 gaaagtaaatcatagcattttattagaaattagatcggtaatacatgttagaatatcatcaaagacctggaagctagtactagatgtggctgccttagct 20706178  T
Q  132 aaagcatgtgcaa 144  Q
    |||||||||||||    
T  20706177 aaagcatgtgcaa 20706165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 19609065 - 19609173
Alignment:
Q  36 gtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaag 135  Q
    |||||||||||||||| ||||||||| |||||| | ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||     
T  19609065 gtaaattatatcatttcattaaaaattagatcggtaatacatgctggaatatcatcaaacacctggaagctaatactagatgtggctactttagctaaaa 19609164  T
Q  136 catgtgcaa 144  Q
    |||| ||||    
T  19609165 catgagcaa 19609173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 42765440 - 42765340
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    ||||| |||||||||||||| ||||||||| |||||  | |||||||| |||||||||||||||| ||| ||| || |||||||||||||| |||| |||    
T  42765440 gaaagaaaattatatcatttcattaaaaattagatcactaatacatgtaggaatatcatcaaagatctggaagctagtactagatgtggctgccttggct 42765341  T
Q  132 a 132  Q
    |    
T  42765340 a 42765340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 36961880 - 36961980
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    ||||| |||||||||||||| ||||||||| ||||||  ||||||||| |||||||||||||| | ||| ||| || ||||||||| |||| |||| |||    
T  36961880 gaaagaaaattatatcatttcattaaaaattagatcgccgatacatgtaggaatatcatcaaaaatctggaagctagtactagatgcggctgccttggct 36961979  T
Q  132 a 132  Q
    |    
T  36961980 a 36961980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 11619117 - 11619189
Alignment:
Q  72 atacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgtgcaa 144  Q
    |||||||||||||||||||||||||| || ||| || |||||||||||||| ||||| |||| ||||| ||||    
T  11619117 atacatgttggaatatcatcaaagacatggaagctagtactagatgtggctgccttaactaatgcatgcgcaa 11619189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 21084909 - 21085015
Alignment:
Q  38 aaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagca 137  Q
    |||| ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||    
T  21084909 aaatcatatcatttcattaaaaatcagatcggtaatacatgttggaatatcatcaaagacctgaaaggtagtactagatgtggctgccttagctaaagca 21085008  T
Q  138 tgtgcaa 144  Q
    |||||||    
T  21085009 tgtgcaa 21085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 34071270 - 34071382
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    |||||||||||||||||||| |||||||||||||||  | ||||||||||||||||||||||||||||  ||| ||  ||||||||||||| ||||||||    
T  34071270 gaaagtaaattatatcatttcattaaaaatcagatcagtaatacatgttggaatatcatcaaagacctagaagctagaactagatgtggctgccttagct 34071369  T
Q  132 aaagcatgtgcaa 144  Q
    ||||  |||||||    
T  34071370 aaagtgtgtgcaa 34071382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 31426606 - 31426498
Alignment:
Q  36 gtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaag 135  Q
    |||||||||||||||| ||||||||| |||| | | ||||||| ||||||||||||||| ||||| ||| || |||||||||||||| | |||| ||||     
T  31426606 gtaaattatatcatttcattaaaaattagattggtaatacatgctggaatatcatcaaacacctggaagctagtactagatgtggctgctttagttaaaa 31426507  T
Q  136 catgtgcaa 144  Q
    |||| ||||    
T  31426506 catgagcaa 31426498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 27072523 - 27072423
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagct 131  Q
    ||||| |||||||||||||| ||||||||| |||||| | |||||||| |||||||||||||| | ||| ||| || ||||||||| |||| |||| |||    
T  27072523 gaaagaaaattatatcatttcattaaaaattagatcgctaatacatgtaggaatatcatcaaaaatctggaagctagtactagatgcggctgccttggct 27072424  T
Q  132 a 132  Q
    |    
T  27072423 a 27072423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 20471297 - 20471237
Alignment:
Q  72 atacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagcta 132  Q
    |||||||| |||||||||||||||||||| ||| || ||||||||| |||| |||||||||    
T  20471297 atacatgtaggaatatcatcaaagacctggaagctagtactagatgcggctgccttagcta 20471237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 4222852 - 4222888
Alignment:
Q  379 tcatatgtggtggtcaagcccttttatttgtttgggc 415  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  4222852 tcatatgtggtggtcaagcccctttgtttgtttgggc 4222888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 25732250 - 25732357
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagc 136  Q
    ||||||||||||||| |||||||||||  |||   ||||||| ||||||||||||||||||||| ||| || ||||| |||||| | |||||||||||||    
T  25732250 taaattatatcatttcattaaaaatcaattcggaaatacatgctggaatatcatcaaagacctggaagctagtactacatgtggttgccttagctaaagc 25732349  T
Q  137 atgtgcaa 144  Q
    ||||||||    
T  25732350 atgtgcaa 25732357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 22974918 - 22974831
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaa-tcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgt 118  Q
    |||| ||||| |||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||  ||| || ||||||||||    
T  22974918 gaaaataaatcatatcattttattaaaaaatcagatcggtaatacatgttggaatatcatcaaagacctaaaagctagtactagatgt 22974831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 429
Target Start/End: Original strand, 3965000 - 3965129
Alignment:
Q  300 ttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagccc 399  Q
    |||||||| |||||||||||  |||| | || |  |||| |||||||||||||| ||| |||||||| ||| ||||||| |||| ||| ||||||| |||    
T  3965000 ttcaccaactggtagagaaagccaaattacattattttttgtggatgaaggctagtaacatttctattcatcataatttgcatacgtgctggtcaaaccc 3965099  T
Q  400 ttttatttgtttgggcgttagctagtttgt 429  Q
     |||||||||||||  ||| ||||||||||    
T  3965100 ctttatttgtttggatgttggctagtttgt 3965129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 28161867 - 28161974
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagc 136  Q
    ||||||||||||||| ||||||||| | || |   ||||||| ||||||||||||||||||||| ||| || ||||| ||||||||  ||||||||| |     
T  28161867 taaattatatcatttcattaaaaattaaattggaaatacatgctggaatatcatcaaagacctggaagctagtactacatgtggctgtcttagctaacgt 28161966  T
Q  137 atgtgcaa 144  Q
    ||||||||    
T  28161967 atgtgcaa 28161974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 7995337 - 7995234
Alignment:
Q  41 ttatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgt 140  Q
    ||||||||||||||||||||| | |||  | |||||||||| ||| ||||||||||   | ||| ||||| ||||||||||| ||||||||||  |||||    
T  7995337 ttatatcattttattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacgaaagctaatattagatgtggctgccttagctaattcatgt 7995238  T
Q  141 gcaa 144  Q
    ||||    
T  7995237 gcaa 7995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 412
Target Start/End: Original strand, 28994583 - 28994695
Alignment:
Q  300 ttcaccaattggtagagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctatccataataattttcatatgtggtggtcaagccc 399  Q
    |||| ||||||||||||||| ||||| | | ||||||||||||||||||| |   |||| |||||||||     ||||||||||||  |||||| ||| |    
T  28994583 ttcatcaattggtagagaaagtcaaattacgatccttttggtggatgaagtcatttaatttttctatccggccaaattttcatatgcagtggtcgagcgc 28994682  T
Q  400 ttttatttgtttg 412  Q
    |||| ||||||||    
T  28994683 ttttgtttgtttg 28994695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 43613401 - 43613468
Alignment:
Q  204 ctatacgctctttcatgcaacttatctggttgtgctctatgtgggttctgtggaatgaaagaaacaac 271  Q
    |||||||||| |||||||||||||| ||||| |  | |||||||||| ||||||||||| | ||||||    
T  43613401 ctatacgctcgttcatgcaacttatttggttattgtgtatgtgggttgtgtggaatgaacgtaacaac 43613468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 31263480 - 31263440
Alignment:
Q  374 aattttcatatgtggtggtcaagcccttttatttgtttggg 414  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  31263480 aattttcatatgtggtggtggagcccttttgtttgtttggg 31263440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 11443 - 11550
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagc 136  Q
    ||||||||||||||| |||||||||||  |||   ||||||||||| ||||||||||||||||| ||| || ||||| |||||||| ||||||||||||     
T  11443 taaattatatcatttcattaaaaatcaagtcggaaatacatgttgggatatcatcaaagacctggaagctagtactacatgtggctgccttagctaaagt 11542  T
Q  137 atgtgcaa 144  Q
    ||| ||||    
T  11543 atgagcaa 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 13932 - 14029
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaa 134  Q
    ||||||||||||||| ||||||||||| || |   ||||||| |||||||||||||||||| |  ||| || ||||| |||||||| |||||||||||    
T  13932 taaattatatcatttcattaaaaatcaaattggaaatacatgctggaatatcatcaaagactttgaagctagtactacatgtggctgccttagctaaa 14029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 1069 - 973
Alignment:
Q  37 taaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaa 133  Q
    ||||||||||||||| ||||||||||| || |   ||||||| |||||||||||||||||| || ||  || ||||| |||||||| ||||||||||    
T  1069 taaattatatcatttcattaaaaatcaaattggaaatacatgctggaatatcatcaaagacttggaaactagtactacatgtggctgccttagctaa 973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 215606 - 215522
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagat 116  Q
    |||| ||| ||||||||||| | |||||||||||||  | |||||||||||||||||||||||||| || ||| || ||||||||    
T  215606 gaaaataacttatatcatttcactaaaaatcagatcagtaatacatgttggaatatcatcaaagacatggaagctagtactagat 215522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 234619 - 234707
Alignment:
Q  32 gaaagtaaattatatcattttattaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtgg 120  Q
    |||||| ||||||||||||| ||||||||||| |||  | |||||||  |||||||||||||||| ||| ||| || ||||||||||||    
T  234619 gaaagtgaattatatcatttcattaaaaatcaaatcagtaatacatgcaggaatatcatcaaagatctggaagctagtactagatgtgg 234707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 14381 - 14472
Alignment:
Q  53 attaaaaatcagatcgatgatacatgttggaatatcatcaaagacctgtaagttaatactagatgtggctaccttagctaaagcatgtgcaa 144  Q
    |||||||||||||||  | ||||||||||||||||||| |||||  |  |||||| |||||||||||  |  ||||||||||| ||||||||    
T  14381 attaaaaatcagatccgtaatacatgttggaatatcattaaagatattgaagttagtactagatgtgattgtcttagctaaagtatgtgcaa 14472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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