View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_30 (Length: 436)

Name: NF20618_low_30
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_30
NF20618_low_30
[»] chr6 (1 HSPs)
chr6 (20-397)||(32509220-32509596)
[»] chr3 (3 HSPs)
chr3 (118-203)||(50233242-50233327)
chr3 (230-314)||(7602068-7602157)
chr3 (230-263)||(34904498-34904531)
[»] chr4 (6 HSPs)
chr4 (188-264)||(47030913-47030990)
chr4 (191-310)||(45989118-45989243)
chr4 (230-263)||(54533665-54533698)
chr4 (188-306)||(42068452-42068576)
chr4 (188-262)||(4919546-4919621)
chr4 (230-263)||(54532317-54532350)
[»] chr8 (3 HSPs)
chr8 (230-263)||(18078841-18078874)
chr8 (230-263)||(18077478-18077511)
chr8 (230-263)||(44521132-44521165)
[»] chr7 (3 HSPs)
chr7 (188-264)||(34094655-34094732)
chr7 (188-263)||(19437189-19437265)
chr7 (188-310)||(6443113-6443242)
[»] chr2 (3 HSPs)
chr2 (230-263)||(19210001-19210034)
chr2 (188-262)||(14096805-14096880)
chr2 (230-263)||(19211361-19211394)
[»] chr1 (6 HSPs)
chr1 (230-263)||(18789020-18789053)
chr1 (230-263)||(52731281-52731314)
chr1 (188-262)||(27286714-27286789)
chr1 (192-305)||(14291769-14291887)
chr1 (230-263)||(18790383-18790416)
chr1 (230-263)||(52732642-52732675)
[»] chr5 (2 HSPs)
chr5 (230-263)||(33683641-33683674)
chr5 (230-263)||(33684968-33685001)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 32509596 - 32509220
Alignment:
Q  20 ctaaccaccgtcattagttcatcacaaacaataacactagtgctcatggcaacataaaaagtccttttatccggtacttattgaacagcaacaacaacca 119  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32509596 ctaaccaccgtctttagttaatcacaaacaataacactagtgctcatggcaacataaaaagtccttttatccggtacttattgaacagcaacaacaacca 32509497  T
Q  120 caacagtcaattttttgtttccataaccatttacaaatcaaaagggttatttgttttcacaactaaagttgggtattttttgttaaattgaaatttttta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32509496 caacagtcaattttttgtttccataaccatttacaaatcaaaagggttatttgttttcacaactaaagttgggtattttttgttaaattgaattttttta 32509397  T
Q  220 tttcactttaagtgtttaaagatgcaaaaaattgcttgaaatcaatatgttatttggtttatgattctttgttcaaattgaatttttggtgttaagaatt 319  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32509396 tttcactttaaatgtttaaagatgcagaaaattgcttgaaatcaatatgttatttggtttatgattcttttttcaaattgaatttttggtgttaagaatt 32509297  T
Q  320 cttaatttagtggttttttgttccgggtcgggtggattttaaaccaaatcgttatgacaagatggaagatggagtatt 397  Q
    |||||| | |||||||||  || |||| |||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  32509296 cttaatgtggtggtttttcatttcggggcgggtggattctcaaccaaatcgttatgacaaga-ggaagatggagtatt 32509220  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 50233242 - 50233327
Alignment:
Q  118 cacaacagtcaattttttgtttccataaccatttacaaatcaaaagggttatttgttttcacaactaaagttgggtattttttgtt 203  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || | | |||||||||||||||||    
T  50233242 cacaacagtcaatttttcgtttccataaccatttataaatcaaaagggttatttgttttcataattgaggttgggtattttttgtt 50233327  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 7602157 - 7602068
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca-----atatgttatttggtttatgattctttgttcaaattgaatttttggtgttaa 314  Q
    |||||||||||||||| |||||||||||||||||     | ||| |||||||||| ||| |||  ||| ||||||| |||||||||||||    
T  7602157 agtgtttaaagatgcagaaaattgcttgaaatcacaaagaaatggtatttggtttgtgagtctaggttaaaattgagtttttggtgttaa 7602068  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 34904531 - 34904498
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  34904531 agtgtttaaagatgcagaaaattgcttgaaatca 34904498  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 47030990 - 47030913
Alignment:
Q  188 ttgggtattttttgtt-aaattgaaattttttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatcaa 264  Q
    |||||||||||||||| ||||  ||||| |||| |||||||||||||||||||| |||| ||||||| ||| ||||||    
T  47030990 ttgggtattttttgttcaaataaaaattatttaattcactttaagtgtttaaagttgcagaaaattgtttgtaatcaa 47030913  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 310
Target Start/End: Complemental strand, 45989243 - 45989118
Alignment:
Q  191 ggtattttttgtt-aaattgaaattttttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatca-----atatgttatttggtttatgat 284  Q
    ||||||||||||| ||||  ||||| |||| |||||||| ||||||||||| |||| ||||||| ||| |||||     ||||||| ||| ||| |||||    
T  45989243 ggtattttttgttcaaataaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatcaaaaggatatgttgttttgttcatgat 45989144  T
Q  285 tctttgttcaaattgaatttttggtg 310  Q
    | | ||||| |||||| |||||||||    
T  45989143 tatgtgttcgaattgagtttttggtg 45989118  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 54533698 - 54533665
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    ||||||||||||||||||||||||||||||||||    
T  54533698 agtgtttaaagatgcaaaaaattgcttgaaatca 54533665  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 42068576 - 42068452
Alignment:
Q  188 ttgggtattttttgtt-aaattgaaattttttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatcaa-----tatgttatttggtttat 281  Q
    |||||||||||||||| ||||  ||||| |||| |||||||| | ||||||||| |||| ||||||| ||| ||||||     |||||| ||| ||| ||    
T  42068576 ttgggtattttttgttcaaataaaaattatttaattcactttgaatgtttaaagttgcagaaaattgtttgtaatcaaaaggatatgttgttttgttcat 42068477  T
Q  282 gattctttgttcaaattgaattttt 306  Q
    |||| | ||||| ||||||||||||    
T  42068476 gattatgtgttcgaattgaattttt 42068452  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 4919546 - 4919621
Alignment:
Q  188 ttgggtattttttgttaaattgaaattt-tttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatc 262  Q
    |||||||||||||||| || | |||||| ||||||||| ||| |||| |||||| | ||||| |||||||||||||    
T  4919546 ttgggtattttttgttgaaattaaatttatttatttcaatttgagtgcttaaagttacaaaacattgcttgaaatc 4919621  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 54532317 - 54532350
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  54532317 agtgtttaaagatgcagaaaattgcttgaaatca 54532350  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 18078874 - 18078841
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    ||||||||||||||||||||||||||||||||||    
T  18078874 agtgtttaaagatgcaaaaaattgcttgaaatca 18078841  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 18077478 - 18077511
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  18077478 agtgtttaaagatgcagaaaattgcttgaaatca 18077511  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 44521132 - 44521165
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  44521132 agtgtttaaagatgcagaaaattgcttgaaatca 44521165  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 34094655 - 34094732
Alignment:
Q  188 ttgggtattttttgtt-aaattgaaattttttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatcaa 264  Q
    |||||||||||||||| ||||  ||||| |||| |||||||| ||||||||||| |||| ||||||| ||| ||||||    
T  34094655 ttgggtattttttgttcaaataaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatcaa 34094732  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 19437189 - 19437265
Alignment:
Q  188 ttgggtattttttgttaaattgaaattt-tttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| || | |||||| ||||||||| ||| |||| |||||| | ||||| ||||||||||||||    
T  19437189 ttgggtattttttgttgaaattaaatttatttatttcaatttgagtgcttaaagttacaaaacattgcttgaaatca 19437265  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 310
Target Start/End: Original strand, 6443113 - 6443242
Alignment:
Q  188 ttgggtattttttgttaaattgaaa--ttttttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatca-----atatgttatttggttta 280  Q
    |||||||||||||||| || | |||  || |||| |||||||| ||||||||||| |||| ||||||| ||| |||||     ||||||| ||| ||| |    
T  6443113 ttgggtattttttgttcaaataaaaaattatttaattcactttgagtgtttaaagttgcagaaaattgtttgtaatcaaaaggatatgttgttttgttca 6443212  T
Q  281 tgattctttgttcaaattgaatttttggtg 310  Q
    ||||| | ||||| |||||| |||||||||    
T  6443213 tgattatgtgttcgaattgagtttttggtg 6443242  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 19210001 - 19210034
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    ||||||||||||||||||||||||||||||||||    
T  19210001 agtgtttaaagatgcaaaaaattgcttgaaatca 19210034  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 14096805 - 14096880
Alignment:
Q  188 ttgggtattttttgttaaattgaaattt-tttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatc 262  Q
    |||||||||||||||| || | |||||| ||||||||| ||| |||| |||||| | ||||| |||||||||||||    
T  14096805 ttgggtattttttgttgaaattaaatttatttatttcaatttgagtgcttaaagttacaaaacattgcttgaaatc 14096880  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 19211394 - 19211361
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  19211394 agtgtttaaagatgcagaaaattgcttgaaatca 19211361  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 18789020 - 18789053
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    ||||||||||||||||||||||||||||||||||    
T  18789020 agtgtttaaagatgcaaaaaattgcttgaaatca 18789053  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 52731281 - 52731314
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    ||||||||||||||||||||||||||||||||||    
T  52731281 agtgtttaaagatgcaaaaaattgcttgaaatca 52731314  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 27286714 - 27286789
Alignment:
Q  188 ttgggtattttttgttaaattgaaattt-tttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatc 262  Q
    |||||||||||||||| || | |||||| ||||||||| ||| |||| |||||| | ||||| |||||||||||||    
T  27286714 ttgggtattttttgttgaaattaaatttatttatttcaatttgagtgcttaaagttacaaaacattgcttgaaatc 27286789  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 14291887 - 14291769
Alignment:
Q  192 gtattttttgttaaattgaaattttttatttcactttaagtgtttaaagatgcaaaaaattgcttgaaatca-----atatgttatttggtttatgattc 286  Q
    |||| ||||||| || | || |||||| ||||||||   ||||||||||||| | ||| | | |||||||||     |||||| ||||||||||||||||    
T  14291887 gtatattttgttgaaattaatttttttttttcacttgttgtgtttaaagatgaagaaattggattgaaatcacaaggatatgtaatttggtttatgattc 14291788  T
Q  287 tttgttcaaattgaatttt 305  Q
    | |||||||||||| ||||    
T  14291787 tgtgttcaaattgagtttt 14291769  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 18790416 - 18790383
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  18790416 agtgtttaaagatgcagaaaattgcttgaaatca 18790383  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 52732675 - 52732642
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  52732675 agtgtttaaagatgcagaaaattgcttgaaatca 52732642  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 33683641 - 33683674
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  33683641 agtgtttaaagatgcagaaaattgcttgaaatca 33683674  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 33685001 - 33684968
Alignment:
Q  230 agtgtttaaagatgcaaaaaattgcttgaaatca 263  Q
    |||||||||||||||| |||||||||||||||||    
T  33685001 agtgtttaaagatgcagaaaattgcttgaaatca 33684968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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