View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_31 (Length: 433)
Name: NF20618_low_31
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 24 - 414
Target Start/End: Complemental strand, 314362 - 313972
Alignment:
| Q |
24 |
acgcggcaacaagtgaaggagaagatgtcgatggagggaagcgatgataatcgatggcagtcttacaacaccgtttacactagcgcgaaagcaggaatgg |
123 |
Q |
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| T |
314362 |
acgcggcaacaagtgaaagagaagatgtcgatggagggaagcgatgataatcgatggcagtcttacaacaccgtttacactagcgcgaaagcaggaatgg |
314263 |
T |
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| Q |
124 |
aaggtgttgacaaagaaaaagtacaaaggattgtttatgaaatgagcaaaggatccaaatattttcagaatgaggaaaggaaggagtcttttatcaaata |
223 |
Q |
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| T |
314262 |
aaggtgttgacaaagaaaaagtacaaaggattgtttatgaaatgagcaaaggatccaaatattttcagaatgaggaaaggaaggagtcttttatcaaata |
314163 |
T |
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| Q |
224 |
caaagttcaaaacatgcgtcttcacttttcaaaccttacacactctgatttatcacattatcaaaaggtaacatgccatccttcttcatttcattttaat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
314162 |
caaagttcaaaacatgcgtcttcacttttcaaaccttacacactctgatttatcacattatcaaaaggtaacatgccatccgtcttcatttcattttaat |
314063 |
T |
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| Q |
324 |
tacatcttaatcttaatttagggttttcaaaaccttatttaatttatcatttcaaataccagattgctgataaaagaattcttgaacttga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
314062 |
tacatcttaatcttaatttagggttttcaaaaccttatttaatttattatttcaaataccagattgctgataaaagaattcttgaacttga |
313972 |
T |
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