View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_33 (Length: 420)
Name: NF20618_low_33
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 3918381 - 3917991
Alignment:
| Q |
19 |
ctagtgtggcttcacctgctcattcaaaacaagaatcaaggaagcacccaagcataatttcaagcgctttctgttcatcaaaaaacttccccttgcgacc |
118 |
Q |
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| T |
3918381 |
ctagtgtggcttcacctgctcattcaaaacaagaatcaaggaagcacccaagcataatttcaagcgctttctgttcatcaaaaaacttccccttgcgacc |
3918282 |
T |
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| Q |
119 |
cctgcaagctcttatttcaaataacgatttgaagaatagaatctttggatcaagtcatgctcctttatcaagtggaaaagacaaagtttattatggaagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3918281 |
cctgcaagctcttatttcaaataacgatttgaagaatagaatctttggatcaagtcatgctcctttatcaagtggaaaagacaaagtttattttggaagg |
3918182 |
T |
|
| Q |
219 |
acttgtcccgattccaccaccagggttagatacattacgtat--caatgtttctagttgcttgtttcatttgcattaattaactcaaaatggaaaaaacg |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918181 |
acttgtcccgattccaccaccaaggttagatacattacgtatcccaatgtttctagttgcttgtttcatttgcattaattaactcaaaatggaaaaaacg |
3918082 |
T |
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| Q |
317 |
gtttatatataatatcatactacagatggaacttgtatactatagttgctcttctgatatttgtcctatccaacattctcaccttaatcct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918081 |
gtttatatataatatcatactacagatggaacttgtatactatagttgctcttctgatatttgtcctatccaacattctcaccttaatcct |
3917991 |
T |
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