View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_36 (Length: 409)
Name: NF20618_low_36
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 43 - 393
Target Start/End: Complemental strand, 44851822 - 44851472
Alignment:
| Q |
43 |
aatagtatcaaaatcatcgtgaagatattgaaactattgttttaatcaatagaggtttaatcgaaggttcaagcaaaaagataaacttcatgattaatgg |
142 |
Q |
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| T |
44851822 |
aatagtatcaaaatcatcgtgaagatattgaaactattgttttaatcaatagaggtttaatcgaaggttcaagcaaaaagatgaatttcatgattaatgg |
44851723 |
T |
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| Q |
143 |
agtatttcacattaccataagattagcaataagcatttaaatttgaaggaagaatatcatgttcatagttgaataatcatgactatgatgaatgtttttt |
242 |
Q |
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| T |
44851722 |
aagatttcacattaccataagattagcaataagcatttaaatttgaaggaagaatatcatgttcatagttgaataatcatgactatgatgaatgtttttt |
44851623 |
T |
|
| Q |
243 |
ccacaactcacgtcaagtttttgagttacattcttggaggatttattactacagtcaacaccaaaaggaattatgaatatattttatgaggatcttaaaa |
342 |
Q |
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| T |
44851622 |
ccacaactcacgtcaagtttttgagttacattctttgaggatttattactacagtcaacaccaaaaggaattatgaatatattttatgaggatcttaaaa |
44851523 |
T |
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| Q |
343 |
tatgttcaaagtgtcatcctaataaagtctctcaaatatattcaatgaaca |
393 |
Q |
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| T |
44851522 |
tatgttcaaagtgtcatcctaataaagtctctcaaatatattcaatgaaca |
44851472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 59 - 183
Target Start/End: Original strand, 22394139 - 22394265
Alignment:
| Q |
59 |
tcgtgaagatattgaaa--ctattgttttaatcaatagaggtttaatcgaaggttcaagcaaaaagataaacttcatgattaatggagtatttcacatta |
156 |
Q |
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| T |
22394139 |
tcgtgaagatattgaaagactattgttttaatcaatagaggtttggtcgaaggttcaagcaaaaagatgaacttcataattaatggagtctttcacatta |
22394238 |
T |
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| Q |
157 |
ccataagattagcaataagcatttaaa |
183 |
Q |
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|||||| ||||| | ||| ||||||| |
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| T |
22394239 |
tcataaggttagcgacaagtatttaaa |
22394265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 11524261 - 11524384
Alignment:
| Q |
99 |
ttaatcgaaggttcaagcaaaaagataaacttcatgattaatggagtatttcacattaccataagattagcaataagcatttaaatttgaaggaagaata |
198 |
Q |
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||||| |||||||||| | | ||||| ||| |||||||||||| || |||||||||| || ||| ||||||| | ||||||||||| |||||| | | |
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| T |
11524261 |
ttaattgaaggttcaaactagaagatgaacctcatgattaatgtagcttttcacattaacacaaggttagcaaca--catttaaatttcaaggaactaga |
11524358 |
T |
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| Q |
199 |
tcatgttcatagttgaataatcatga |
224 |
Q |
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| | ||||||||||||| ||| |||| |
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| T |
11524359 |
tgaggttcatagttgaagaataatga |
11524384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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