View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_38 (Length: 396)
Name: NF20618_low_38
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_38 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 27526466 - 27526832
Alignment:
| Q |
19 |
tttgaaatgtaaacaatttgttactaaaattgaacaattgtgtatccttagctactagctaataaaactaacttgttttatgcagtatgatttcgagggc |
118 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526466 |
tttgaaatttaaacaatttgttactaaaattgaactattgtgtatccttagctactagctaataaaactaacttgttttatgcagtatgatttcgagggc |
27526565 |
T |
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| Q |
119 |
cgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaagaattgagtttgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526566 |
cgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttagaacttcatttgtttaacaattttttgtgaaagaattgagtttgca |
27526665 |
T |
|
| Q |
219 |
tcttgatttcatgatataatttatgactcaagatattcattaaacattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526666 |
tcttgatttcatgatataatttatgactcaagatattcattaaatattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaa |
27526765 |
T |
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| Q |
319 |
aaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
385 |
Q |
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| T |
27526766 |
aaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattctcttgtcttcat |
27526832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 375
Target Start/End: Original strand, 27532161 - 27532476
Alignment:
| Q |
61 |
tatccttagctactagctaataaaactaacttgttttatgcagtatgatttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtgg |
160 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
27532161 |
tatccttagctactagctaataaaattaacttgttttatgcagtatgatttcaagggctgacatgaatgaagtttatgctgagcttgcaagacctggtgg |
27532260 |
T |
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| Q |
161 |
ctggaatggttagaacttcatttgtttaacaattttttgtgaaaga-attgagtttgcatcttgatttcatgatataatttatgactcaagatattcatt |
259 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| || |||||||||| |||||||||||||| ||||||||| || | |||||||| |
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| T |
27532261 |
ttggaatggttagaatttcatttgtttaacaactttttgtgaaagacatcgagtttgcatattgatttcatgatacaatttatgagtcgatttattcatt |
27532360 |
T |
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| Q |
260 |
aaacattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaa |
359 |
Q |
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||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
27532361 |
aaacattctaactcgacagatcctgatatgcttgaggttggaaatggagggatgacaaaaaatgagtatatcgttcacttcagtttgtgggccatttcaa |
27532460 |
T |
|
| Q |
360 |
aggttctatcattctc |
375 |
Q |
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|||||| || |||||| |
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| T |
27532461 |
aggttcgattattctc |
27532476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 20606 - 20712
Alignment:
| Q |
284 |
gacatgcttgagg-ttggaaatggagggatgac--aaaaaatgaatatattgttca-cttcagtttgtgggcc-atttcaaaggttctatcattctcttg |
378 |
Q |
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||||||||||||| |||||||||| ||| ||| |||||| | |||||||||||| |||||||||||||||| || ||||||||||||||||||||| | |
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| T |
20606 |
gacatgcttgagggttggaaatggggggcagaccaaaaaaagggatatattgttcaacttcagtttgtgggcccatgtcaaaggttctatcattctctgg |
20705 |
T |
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| Q |
379 |
tcttcat |
385 |
Q |
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||||||| |
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| T |
20706 |
tcttcat |
20712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 24883685 - 24883727
Alignment:
| Q |
275 |
acagatcctgacatgcttgaggttggaaatggagggatgacaa |
317 |
Q |
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| T |
24883685 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
24883727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 32590259 - 32590219
Alignment:
| Q |
277 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
317 |
Q |
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| T |
32590259 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32590219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 32600707 - 32600667
Alignment:
| Q |
277 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
317 |
Q |
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| T |
32600707 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32600667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 34593853 - 34593815
Alignment:
| Q |
277 |
agatcctgacatgcttgaggttggaaatggagggatgac |
315 |
Q |
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| T |
34593853 |
agatcctgacatgcttgaggttgggaatggaggcatgac |
34593815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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