View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_39 (Length: 387)

Name: NF20618_low_39
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_39
NF20618_low_39
[»] chr1 (6 HSPs)
chr1 (50-368)||(26905739-26906069)
chr1 (167-267)||(5377972-5378072)
chr1 (43-122)||(5377903-5377982)
chr1 (320-360)||(5378208-5378248)
chr1 (167-267)||(21634030-21634129)
chr1 (320-359)||(21919148-21919187)
[»] chr8 (12 HSPs)
chr8 (16-368)||(15834316-15834685)
chr8 (16-368)||(24095577-24095921)
chr8 (43-205)||(31574909-31575072)
chr8 (16-122)||(7788737-7788844)
chr8 (197-267)||(7788855-7788925)
chr8 (167-225)||(26193676-26193734)
chr8 (320-359)||(33591833-33591872)
chr8 (320-359)||(33601422-33601461)
chr8 (322-359)||(42895927-42895964)
chr8 (324-360)||(12915807-12915843)
chr8 (183-267)||(15831624-15831707)
chr8 (177-213)||(18252172-18252208)
[»] chr5 (14 HSPs)
chr5 (110-267)||(26653099-26653256)
chr5 (110-267)||(26924684-26924841)
chr5 (43-205)||(42732069-42732232)
chr5 (16-128)||(26653270-26653383)
chr5 (16-128)||(26924855-26924968)
chr5 (183-264)||(24061060-24061140)
chr5 (183-264)||(34460878-34460958)
chr5 (183-264)||(34475135-34475215)
chr5 (320-360)||(20038565-20038605)
chr5 (188-267)||(4636345-4636424)
chr5 (320-359)||(22457358-22457397)
chr5 (320-353)||(20036450-20036483)
chr5 (320-353)||(22447988-22448021)
chr5 (183-228)||(36433375-36433420)
[»] chr2 (5 HSPs)
chr2 (43-181)||(29919180-29919318)
chr2 (16-122)||(14273734-14273841)
chr2 (197-267)||(14273653-14273723)
chr2 (183-264)||(21749673-21749753)
chr2 (312-353)||(24022588-24022629)
[»] scaffold0482 (2 HSPs)
scaffold0482 (16-122)||(3955-4062)
scaffold0482 (197-267)||(3874-3944)
[»] chr6 (7 HSPs)
chr6 (185-357)||(12173735-12173916)
chr6 (183-262)||(30116065-30116143)
chr6 (183-262)||(34270340-34270418)
chr6 (183-264)||(20073885-20073965)
chr6 (320-360)||(23885035-23885075)
chr6 (165-218)||(35025158-35025211)
chr6 (320-360)||(22066633-22066673)
[»] chr3 (22 HSPs)
chr3 (16-117)||(7783444-7783546)
chr3 (260-358)||(4307983-4308081)
chr3 (260-354)||(4307743-4307837)
chr3 (150-267)||(7783524-7783641)
chr3 (139-267)||(4307848-4307970)
chr3 (67-267)||(4307539-4307730)
chr3 (183-229)||(6971553-6971599)
chr3 (314-360)||(7783770-7783816)
chr3 (159-209)||(12998420-12998470)
chr3 (183-264)||(3676325-3676405)
chr3 (183-264)||(3685460-3685540)
chr3 (167-267)||(4952041-4952138)
chr3 (183-264)||(20435329-20435409)
chr3 (183-264)||(20449255-20449335)
chr3 (183-264)||(30012839-30012919)
chr3 (183-264)||(30022206-30022286)
chr3 (183-264)||(41432495-41432575)
chr3 (183-264)||(41440985-41441065)
chr3 (183-262)||(6957273-6957351)
chr3 (320-359)||(24874995-24875034)
chr3 (183-228)||(16469884-16469929)
chr3 (165-218)||(47729907-47729960)
[»] chr7 (16 HSPs)
chr7 (18-275)||(16493989-16494256)
chr7 (183-264)||(792500-792580)
chr7 (183-264)||(808283-808363)
chr7 (183-264)||(3422939-3423019)
chr7 (183-264)||(3432097-3432177)
chr7 (295-362)||(5292950-5293016)
chr7 (185-238)||(5292819-5292872)
chr7 (183-264)||(16264295-16264375)
chr7 (183-264)||(16271961-16272041)
chr7 (320-359)||(13874826-13874865)
chr7 (170-271)||(15174801-15174900)
chr7 (183-228)||(4889748-4889793)
chr7 (183-228)||(37287479-37287524)
chr7 (320-360)||(14634577-14634617)
chr7 (320-360)||(14644265-14644305)
chr7 (324-360)||(33291980-33292016)
[»] chr4 (9 HSPs)
chr4 (183-264)||(3357999-3358079)
chr4 (183-264)||(3367665-3367745)
chr4 (183-264)||(55790428-55790508)
chr4 (183-262)||(22140541-22140619)
chr4 (183-262)||(22152455-22152533)
chr4 (320-360)||(33296939-33296979)
chr4 (170-267)||(15842625-15842720)
chr4 (313-353)||(15842776-15842816)
chr4 (324-360)||(20884255-20884291)
[»] scaffold0334 (1 HSPs)
scaffold0334 (320-359)||(12256-12295)
[»] scaffold1655 (1 HSPs)
scaffold1655 (320-348)||(1481-1509)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 9e-86; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 50 - 368
Target Start/End: Original strand, 26905739 - 26906069
Alignment:
Q  50 aggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaatgttctggatgaattaaagcttaattgttttaattt 149  Q
    ||||||| |||||||||||||||||||| |||||||        |||||||||||  ||||||||||||||||||||||||||||||| |||||||| |     
T  26905739 aggaccataatgttctggattaaataaaccttaaat--------agttttgacaaggaccagaatgttctggatgaattaaagcttaactgttttaaatg 26905830  T
Q  150 gttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactag 249  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| ||    
T  26905831 gttttaacaatgaccaaaatgttcgggagaatgattatataagcagaatgataaaaatgatattaagctgaaatgtgaaaactattttatcaaggaccag 26905930  T
Q  250 aatgttctgg--------------------agaatgataaaacaataatataagatgattttaatcgtgagtttatctttagatatttacgcagttgttt 329  Q
    ||||||||||                    ||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||| ||||||||||    
T  26905931 aatgttctggagaatgattaatataaaagcagaatgataaaacaatattataagctaattttaaacgtgagtttatctttagatatttaagcagttgttt 26906030  T
Q  330 tatcttggaccagaatgttttggatgcagttgttcaatt 368  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  26906031 tatcttggaccagaatgttctggatgcagttgttcaatt 26906069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 5377972 - 5378072
Alignment:
Q  167 aatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatga 266  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| ||| ||||||||||    
T  5377972 aatgatctggagaatgattatataagtcgaatgagaaaaatgatattaagctaaaatgtgaaaactattttatcgaggaccagaacgttatggagaatga 5378071  T
Q  267 t 267  Q
    |    
T  5378072 t 5378072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 5377903 - 5377982
Alignment:
Q  43 tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaatgttctgga 122  Q
    |||| ||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||  | ||||||| ||||||    
T  5377903 tttatacacgaccaaaatgttctggattaaataaaccttaaatgattaaatagttttgacaaggatcagaatgatctgga 5377982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 5378208 - 5378248
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  5378208 gcagttgttttatcttggaccagaatgttctggaggcagtt 5378248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 21634129 - 21634030
Alignment:
Q  167 aatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatga 266  Q
    ||||||||| |||| || |||||||| ||||||||||||||||  ||||||| |||||| |||  || |||| ||| ||| |  ||||||||||||||||    
T  21634129 aatgttctgaagaaggactatataagcagaatgagaaaaatgatgttaagctgaaatgt-aaagttactttaacaaggaccatgatgttctggagaatga 21634031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 21919148 - 21919187
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  21919148 gcagttgttttatcttggaccagaatgttctggaagcagt 21919187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 15834685 - 15834316
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    |||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||  ||||| |||||| ||||||||||||| |||||||||    
T  15834685 attagagtattatatatataacaattgatttatacaggaccagaatgatctggattaaataac-cttaagtgattaaatagttttgacaagaaccagaat 15834587  T
Q  115 gttctggatgaattaaagcttaattgttttaatttgttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatgaaatta 214  Q
    ||| |||||||||||||||||||||||||||||| ||||||||| |||    |||||||||||||||||||||||||| | ||||| |||||||| ||||    
T  15834586 gttatggatgaattaaagcttaattgttttaattggttttaacactga----aatgttctggagaatgattatataagcataatgataaaaatgatatta 15834491  T
Q  215 agctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat---------------------aaaacaataatataagatgattttaa 293  Q
    | || |||| |||||||||||||||||| ||| ||||||||||||||||||||                     |||||| || |||||| | |||||||    
T  15834490 aactgaaatatgaaaactattttatcaaggaccagaatgttctggagaatgattaatataagagcagaatgataaaaacattattataagctaattttaa 15834391  T
Q  294 tcgtgagtttatctttagatatttacgcagttgttttatcttggaccagaatgttttggatgcagttgttcaatt 368  Q
     |||||||||||||||||||||||| ||||||||||||||||| || || ||||| | |||||||||||||||||    
T  15834390 acgtgagtttatctttagatatttatgcagttgttttatcttgaacaagtatgttcttgatgcagttgttcaatt 15834316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 24095577 - 24095921
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||| ||||||||||||||||||| |||| ||||| ||  |||||| |||||||||||||  ||||||| ||| ||||||||||||| |||||||||    
T  24095577 attagagaattagatatataacaattgatttatacaggtcccaaatgttttggattaaataaacattaaatgtttaaatagttttgacaagaaccagaat 24095676  T
Q  115 gttctggatgaattaaagcttaattgttttaatttgttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatgaaatta 214  Q
    ||||| ||||||||||||| |||  ||||||||||||||             ||| ||||| ||||||| |||||||  |||||||||||||||| ||||    
T  24095677 gttctagatgaattaaagcataacagttttaatttgttt-------------aatattctgaagaatgactatataaacagaatgagaaaaatgatatta 24095763  T
Q  215 agctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat----aaaacaataatataagatgattttaatcgtgagtttatcttta 310  Q
    | |||||||||||||||||||||||||| ||  | |||||| |||||||||||    ||||||||| |||||| ||||||||| | ||||||||||||||    
T  24095764 aactaaaatgtgaaaactattttatcaaggatcataatgttatggagaatgattgataaaacaatattataagctgattttaagcttgagtttatcttta 24095863  T
Q  311 gatatttacgcagttgttttatcttggaccagaatgttttggatgcagttgttcaatt 368  Q
    |||||||| ||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  24095864 gatatttatgcagttgttttatcttggaccatgatgttctggatgcagttgttcaatt 24095921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 31574909 - 31575072
Alignment:
Q  43 tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaatgttctggatgaattaaagcttaattgtt 142  Q
    |||| ||| ||||| |||||||||||||||||| | |||||||||||| |||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  31574909 tttatacacgaccaaaatgttctggattaaatataccttaaatgattaaatagttttgacaaggaccaaaatgttctggatgaattaaagcttaattgtt 31575008  T
Q  143 ttaatttgttttaacaatgactaaaatgttctggagaatgatt-atataagtagaatgagaaaa 205  Q
    ||||||||||||||| | ||  | ||||||||||||||||||| ||||||  ||||||||||||    
T  31575009 ttaatttgttttaacgaggatcagaatgttctggagaatgattaatataaacagaatgagaaaa 31575072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 7788737 - 7788844
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| ||||||||| |||||||||| |||||||||||| ||||||||| ||| |||||||||    
T  7788737 attagagtattagatatataacaattgatttatacacgaccaaaatgttctgtattaaataaaccttaaatgattaaatagttttgtcaagaaccagaat 7788836  T
Q  115 gttctgga 122  Q
    ||||||||    
T  7788837 gttctgga 7788844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 7788855 - 7788925
Alignment:
Q  197 atgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  7788855 atgagaaaaatgatattaagctaaaatgtgaaaactgttttatcaaggaccagaatgttctggagaatgat 7788925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 26193676 - 26193734
Alignment:
Q  167 aatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgt 225  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  26193676 aatgttctggagaatgattatataagcagaatgagaaaaatgatattaagctgaaatgt 26193734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 33591833 - 33591872
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  33591833 gcagttgttttatcttggaccagaatgttctggaggcagt 33591872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 33601422 - 33601461
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  33601422 gcagttgttttatcttggaccagaatgttctggaggcagt 33601461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 42895927 - 42895964
Alignment:
Q  322 agttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  42895927 agttgttttatcttggaccagaatgttctggaagcagt 42895964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 12915843 - 12915807
Alignment:
Q  324 ttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  12915843 ttgttttatcttggaccagaatgttctggaggcagtt 12915807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 15831707 - 15831624
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
    |||||||||| ||||||||||||||||  ||||||| || | || ||  ||||||| || |||| ||||| ||||||||||||||    
T  15831707 attatataagcagaatgagaaaaatgacgttaagctgaattatg-aagttattttaacatagaccagaatattctggagaatgat 15831624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 18252208 - 18252172
Alignment:
Q  177 agaatgattatataagtagaatgagaaaaatgaaatt 213  Q
    |||||||||||||||| |||||||||||||| |||||    
T  18252208 agaatgattatataagcagaatgagaaaaattaaatt 18252172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 26653256 - 26653099
Alignment:
Q  110 agaatgttctggatgaattaaagcttaattgttttaatttgttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatga 209  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||| ||| | ||| |||||||||||||||||||||| | |||||||||| |||    
T  26653256 agaaagttctagatgaattaaagcttaattgttttaattggttttaacaaggaccagaatattctggagaatgattatataagcataatgagaaaagtga 26653157  T
Q  210 aattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
     |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  26653156 tattaagctaaaatgtgaaaactattttatcaaggatcagaatgttctggagaatgat 26653099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 26924841 - 26924684
Alignment:
Q  110 agaatgttctggatgaattaaagcttaattgttttaatttgttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatga 209  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||| ||| | ||| |||||||||||||||||||||| | |||||||||| |||    
T  26924841 agaaagttctagatgaattaaagcttaattgttttaattggttttaacaaggaccagaatattctggagaatgattatataagcataatgagaaaagtga 26924742  T
Q  210 aattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
     |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  26924741 tattaagctaaaatgtgaaaactattttatcaaggatcagaatgttctggagaatgat 26924684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 42732069 - 42732232
Alignment:
Q  43 tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaatgttctggatgaattaaagcttaattgtt 142  Q
    |||| ||| ||||| |||||||||||||||||| | |||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  42732069 tttatacacgaccaaaatgttctggattaaatataccttaaatgattaaatagttttgacaaggaccagaatgttctggatgaattaaagattaattgtt 42732168  T
Q  143 ttaatttgttttaacaatgactaaaatgttctggagaatgatt-atataagtagaatgagaaaa 205  Q
    ||||||||||||||||| ||| ||||| || |||||||||||| ||||||  ||||||||||||    
T  42732169 ttaatttgttttaacaaggaccaaaatattatggagaatgattaatataaacagaatgagaaaa 42732232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 26653383 - 26653270
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| |||||||| ||||||||||| ||||||||| || |||||||||||||  |||||||     
T  26653383 attagagtattagatatataacaattgatttatacacgaccaaaatgttcttgattaaataaaccttaaatgaataaatagttttgacaaggaccagaaa 26653284  T
Q  115 gttctggatgaatt 128  Q
    |||| |||||||||    
T  26653283 gttcaggatgaatt 26653270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 26924968 - 26924855
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| |||||||| ||||||||||| ||||||||| || |||||||||||||  |||||||     
T  26924968 attagagtattagatatataacaattgatttatacacgaccaaaatgttcttgattaaataaaccttaaatgaataaatagttttgacaaggaccagaaa 26924869  T
Q  115 gttctggatgaatt 128  Q
    |||| |||||||||    
T  26924868 gttcaggatgaatt 26924855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 24061060 - 24061140
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  24061060 attaaataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 24061140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 34460958 - 34460878
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  34460958 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 34460878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 34475215 - 34475135
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  34475215 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 34475135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 20038605 - 20038565
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  20038605 gcagttgttttatcttggaccagaatgttctggaggcagtt 20038565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 4636424 - 4636345
Alignment:
Q  188 ataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
    ||||| ||||||||||||||||  ||||| |||||    || | ||||||| ||||||| ||||||||||||||||||||    
T  4636424 ataagcagaatgagaaaaatgatgttaagttaaaaataaaagattattttaacaaagaccagaatgttctggagaatgat 4636345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 22457358 - 22457397
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  22457358 gcagttgttttatcttggaccagaatgttctggaagcagt 22457397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 20036483 - 20036450
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttgga 353  Q
    ||||||||||||||||||||||||||||| ||||    
T  20036483 gcagttgttttatcttggaccagaatgttctgga 20036450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 22447988 - 22448021
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttgga 353  Q
    ||||||||||||||||||||||||||||| ||||    
T  22447988 gcagttgttttatcttggaccagaatgttctgga 22448021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 36433420 - 36433375
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaa 228  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||    
T  36433420 attatataagcagaatgagaaaaatgaagttaagctgaattgtgaa 36433375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 29919318 - 29919180
Alignment:
Q  43 tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaatgttctggatgaattaaagcttaattgtt 142  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||  |||| ||||||| |||||||||||||||||||||||    
T  29919318 tttaaacaggaccagaatgttctagattaaataaaccttaaatgattaaataattttgacaaggaccataatgttcaggatgaattaaagcttaattgtt 29919219  T
Q  143 ttaatttgttttaacaatgactaaaatgttctggagaat 181  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  29919218 ttaatttgttttaacaaggaccaaaatgttctggagaat 29919180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 14273841 - 14273734
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||| |||||||||||| ||||||||| |||  ||||||||    
T  14273841 attagagtattagatatataacaattgatttatacacgaccaaaatgttctggattaaataaaccttaaatgattaaatagttttgtcaagtaccagaat 14273742  T
Q  115 gttctgga 122  Q
    ||||||||    
T  14273741 gttctgga 14273734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 14273723 - 14273653
Alignment:
Q  197 atgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  14273723 atgagaaaaatgatattaagctaaaatgtgaaaactattttatcaaggaccagaatgttctggagaatgat 14273653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 21749673 - 21749753
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  21749673 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 21749753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 24022588 - 24022629
Alignment:
Q  312 atatttacgcagttgttttatcttggaccagaatgttttgga 353  Q
    ||||||| ||| |||||||||||||||| |||||||||||||    
T  24022588 atatttaagcaattgttttatcttggacaagaatgttttgga 24022629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 4062 - 3955
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| ||||||||| |||||||||| |||||||||||| ||||||||| ||| |||||||||    
T  4062 attagagtattagatatataacaattgatttatacacgaccaaaatgttctgtattaaataaaccttaaatgattaaatagttttgtcaagaaccagaat 3963  T
Q  115 gttctgga 122  Q
    ||||||||    
T  3962 gttctgga 3955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 3944 - 3874
Alignment:
Q  197 atgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  3944 atgagaaaaatgatattaagctaaaatgtgaaaactgttttatcaaggaccagaatgttctggagaatgat 3874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 357
Target Start/End: Complemental strand, 12173916 - 12173735
Alignment:
Q  185 tatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctgg----------agaatgataaaacaa 274  Q
    |||||||| |||||||||||||||| |||||||| |||||| |||||||||||| ||| ||| ||||||||||||          |||||||||||| ||    
T  12173916 tatataagaagaatgagaaaaatgatattaagctgaaatgt-aaaactattttaacaaggaccagaatgttctggagaataaaacagaatgataaaataa 12173818  T
Q  275 taatataagatgattttaatcgtgagtttatctttagatatttacgcagttgttttatcttggaccagaatgttttggatgca 357  Q
    || |||||  ||||||||| ||||||||| ||||||| |||||| | | ||||||||||||| | ||||||||| || |||||    
T  12173817 tattataatttgattttaaacgtgagtttgtctttagttatttatgtaattgttttatcttgcatcagaatgttctgaatgca 12173735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 30116143 - 30116065
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggaga 262  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||    
T  30116143 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggaga 30116065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 34270418 - 34270340
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggaga 262  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||    
T  34270418 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggaga 34270340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 20073885 - 20073965
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| |||||||||||||||||  ||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  20073885 attatataagcagaatgagaaaaatgaagctaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 20073965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 23885075 - 23885035
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  23885075 gcagttgttttatcttggaccagaatgttctggaggcagtt 23885035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 35025211 - 35025158
Alignment:
Q  165 aaaatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagct 218  Q
    ||||| || ||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  35025211 aaaatattttggagaacgattatataagcagaatgaaaaaaatgatattaagct 35025158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 22066673 - 22066633
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  22066673 gcagctgttttatcttggaccagaatgttctggaggcagtt 22066633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 7783444 - 7783546
Alignment:
Q  16 attagagtattagatatataacaattg-tttaaacaggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaat 114  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||| ||  ||||||||||| |||||||||||||  ||||||||    
T  7783444 attagagtattagatatataacaattgatttatacacgaccaaaatgttctggattaaatcaactttaaatgattaaatagttttgacaaggaccagaat 7783543  T
Q  115 gtt 117  Q
    |||    
T  7783544 gtt 7783546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 358
Target Start/End: Original strand, 4307983 - 4308081
Alignment:
Q  260 agaatgataaaacaataatataagatgattttaatcgtgagtttatctttagatatttacgcagttgttttatcttggaccagaatgttttggatgcag 358  Q
    |||||||||||||| || |||| | ||||||||| ||||||||| |||||| ||||||| ||||||| |||||||||||||| ||| ||||||||||||    
T  4307983 agaatgataaaacattattatatgttgattttaaacgtgagtttgtctttatatatttaagcagttgctttatcttggaccataatattttggatgcag 4308081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 4307743 - 4307837
Alignment:
Q  260 agaatgataaaacaataatataagatgattttaatcgtgagtttatctttagatatttacgcagttgttttatcttggaccagaatgttttggat 354  Q
    |||||||||||||| || |||| | ||||||||| ||||||||| |||||||||||||| |||||||||||||| |  ||||||||||| |||||    
T  4307743 agaatgataaaacattattatatgttgattttaaacgtgagtttgtctttagatatttaagcagttgttttatcctaaaccagaatgttctggat 4307837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 7783524 - 7783641
Alignment:
Q  150 gttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactag 249  Q
    ||||| |||| ||| | |||||| || |||||||||||||  | | |||||||||||||| |||||| ||||||||||||||||||||||||| ||| |     
T  7783524 gttttgacaaggaccagaatgttttgaagaatgattatatgggcataatgagaaaaatgatattaagataaaatgtgaaaactattttatcaaggaccaa 7783623  T
Q  250 aatgttctggagaatgat 267  Q
    ||| || |||||||||||    
T  7783624 aatattatggagaatgat 7783641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 4307848 - 4307970
Alignment:
Q  139 tgttttaatttgttttaacaatgactaaaatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactatttta 238  Q
    ||||||||||||||||||||||||||| ||||||||||      | ||| |||| |||||||||||||| | ||| |||| |||||| |||||||||| |    
T  4307848 tgttttaatttgttttaacaatgactagaatgttctgg-----taatatttaagcagaatgagaaaaataatattgagctgaaatgt-aaaactatttaa 4307941  T
Q  239 tcaaagactagaatgttctggagaatgat 267  Q
     ||| ||| | ||||||||||||||||||    
T  4307942 acaaggaccataatgttctggagaatgat 4307970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 267
Target Start/End: Original strand, 4307539 - 4307730
Alignment:
Q  67 gattaaataaatcttaaatgattacatagttttgacaataaccagaatgttctggatgaattaaagcttaattgttttaatttgttttaacaatgactaa 166  Q
    |||||||||||  |||| || ||| |||||||||||||  |||||||||||||||||     || | |||  ||||||| ||||||||||||||||        
T  4307539 gattaaataaactttaagtgtttaaatagttttgacaaggaccagaatgttctggat-----aacgtttagatgttttactttgttttaacaatga---- 4307629  T
Q  167 aatgttctggagaatgatta---tataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaa 263  Q
      ||||||||| ||||||||   | |||| |||||||||||||||| ||| |||| |||||| |||||||||| | ||| ||| | ||| ||||||||||    
T  4307630 --tgttctggaaaatgattaatatttaagcagaatgagaaaaatgatattgagctgaaatgt-aaaactatttaaacaaggaccataatattctggagaa 4307726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 6971553 - 6971599
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaa 229  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||||    
T  6971553 attatataagcagaatgagaaaaatgaagttaagctaaattgtgaaa 6971599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 7783770 - 7783816
Alignment:
Q  314 atttacgcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  7783770 atttatgcagttgttttatcttggaccagaatgttctggaggcagtt 7783816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 12998420 - 12998470
Alignment:
Q  159 atgactaaaatgttctggagaatgattatataagtagaatgagaaaaatga 209  Q
    ||||| ||||| || ||||||| ||||||||||||||||||||||||||||    
T  12998420 atgaccaaaatattatggagaacgattatataagtagaatgagaaaaatga 12998470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 3676405 - 3676325
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  3676405 attaaataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 3676325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 3685540 - 3685460
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  3685540 attaaataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 3685460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 4952138 - 4952041
Alignment:
Q  167 aatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatga 266  Q
    ||||||||||| ||||||||||  || ||||||||||||||||  ||||| |||||| | || | | ||||| ||| ||| |||||||||||||||||||    
T  4952138 aatgttctggataatgattata--agcagaatgagaaaaatgatgttaagttaaaatat-aagattcttttaacaaggaccagaatgttctggagaatga 4952042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 20435409 - 20435329
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  20435409 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 20435329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 20449335 - 20449255
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  20449335 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 20449255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 30012919 - 30012839
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||  |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  30012919 attatataagcagaatgagaaaaatgaagttaagctaatttgtg-aaattattttaacatggaccagaatattctggagaat 30012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 30022286 - 30022206
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||  |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  30022286 attatataagcagaatgagaaaaatgaagttaagctaatttgtg-aaattattttaacatggaccagaatattctggagaat 30022206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 41432575 - 41432495
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  41432575 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 41432495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 41441065 - 41440985
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  41441065 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttaacatggaccagaatattctggagaat 41440985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 6957273 - 6957351
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggaga 262  Q
    |||||||||| |||||||||||||| || |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||    
T  6957273 attatataagcagaatgagaaaaataaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggaga 6957351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 24874995 - 24875034
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  24874995 gcagttgttttatcttggaccagaatgttctggaggcagt 24875034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 16469884 - 16469929
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaa 228  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||    
T  16469884 attatataagcagaatgagaaaaatgaagttaagctgaattgtgaa 16469929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 47729960 - 47729907
Alignment:
Q  165 aaaatgttctggagaatgattatataagtagaatgagaaaaatgaaattaagct 218  Q
    ||||| |||||||||| |||| |||||| ||||||||||||||||  |||||||    
T  47729960 aaaatattctggagaacgattttataagcagaatgagaaaaatgatgttaagct 47729907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 16494256 - 16493989
Alignment:
Q  18 tagagtattagatatataacaattgtttaaac-aggaccagaatgttctggattaaataaatcttaaatgattacatagttttgacaataaccagaatgt 116  Q
    |||||| ||||||||  ||||||||||| | | ||||| | |||| ||| |||||||||||  ||||||| ||| |||||||| ||||  || |||||||    
T  16494256 tagagttttagatatgaaacaattgttttatcgaggactataatgatctagattaaataaactttaaatgtttaaatagttttaacaaggactagaatgt 16494157  T
Q  117 tctggatgaattaaagcttaattgttttaatttgttttaacaatgactaaaatgttctggagaatgattatataagta-----------gaatgagaaaa 205  Q
    ||| |||||| ||||| |||| ||||| |  | |||| || || ||| |||||| | | |||||||||||||||||||           ||||||||| |    
T  16494156 tcttgatgaaataaagtttaaatgtttgagct-gtttaaataaggaccaaaatgatatagagaatgattatataagtaatatataagtagaatgagaaga 16494058  T
Q  206 atgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgataaaacaat 275  Q
    |||| |||||| | || ||| |||||||||||| | | ||| | |||||||||||||||||| |||||||    
T  16494057 atgatattaagttgaagtgtaaaaactattttaac-aggaccataatgttctggagaatgattaaacaat 16493989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 792500 - 792580
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  792500 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 792580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 808283 - 808363
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  808283 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 808363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 3422939 - 3423019
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  3422939 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 3423019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 3432097 - 3432177
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  3432097 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 3432177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 5292950 - 5293016
Alignment:
Q  295 cgtgagtttatctttagatatttacgcagttgttttatcttggaccagaatgttttggatgcagttgt 362  Q
    ||||||||| |||||||||||| | ||| || ||||||||||||||| |||||| |||||||||||||    
T  5292950 cgtgagtttgtctttagatattaa-gcacttattttatcttggaccaaaatgttatggatgcagttgt 5293016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 5292819 - 5292872
Alignment:
Q  185 tatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactatttta 238  Q
    ||||||||||||||||||||||||| ||||| || |||||| || |||||||||    
T  5292819 tatataagtagaatgagaaaaatgatattaacctgaaatgtaaagactatttta 5292872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 16264295 - 16264375
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  16264295 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttagcatggaccagaatattctggagaat 16264375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 16271961 - 16272041
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| ||||||| || |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  16271961 attatataagcagaatgagaaaaatgaagttaagctgaattgtg-aaattattttagcatggaccagaatattctggagaat 16272041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 13874865 - 13874826
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13874865 gcagttgttttatcttggaccagaatgttctggaagcagt 13874826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 15174900 - 15174801
Alignment:
Q  170 gttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgataa 269  Q
    |||||| ||||||||||||  || ||||||||||||||||  ||||| |||||    || | ||||||| ||| ||| ||||||||||||||| ||||||    
T  15174900 gttctgaagaatgattata--agcagaatgagaaaaatgatgttaagttaaaaataaaagattattttagcaaggaccagaatgttctggagattgataa 15174803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 4889748 - 4889793
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaa 228  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||    
T  4889748 attatataagcagaatgagaaaaatgaagttaagctgaattgtgaa 4889793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 37287524 - 37287479
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaa 228  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||    
T  37287524 attatataagcagaatgagaaaaatgaagttaagctgaattgtgaa 37287479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 14634577 - 14634617
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  14634577 gcagctgttttatcttggaccagaatgttctggaggcagtt 14634617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 14644265 - 14644305
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    |||| |||||||||||||||||||||||| |||| ||||||    
T  14644265 gcagctgttttatcttggaccagaatgttctggaggcagtt 14644305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 33291980 - 33292016
Alignment:
Q  324 ttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  33291980 ttgttttatcttggaccagaatgttctggaggcagtt 33292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 3358079 - 3357999
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  3358079 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 3357999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 3367745 - 3367665
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  3367745 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 3367665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 55790508 - 55790428
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaat 264  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||||    
T  55790508 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggagaat 55790428  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 22140541 - 22140619
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggaga 262  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||    
T  22140541 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggaga 22140619  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 22152455 - 22152533
Alignment:
Q  183 attatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggaga 262  Q
    |||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||| |||||||||    
T  22152455 attatataagcagaatgagaaaaatgaagttaagctaaattgtg-aaattattttaacatggaccagaatattctggaga 22152533  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 33296939 - 33296979
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  33296939 gcagttgttttatcttggaccagaatgttctggaggcagtt 33296979  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 15842625 - 15842720
Alignment:
Q  170 gttctggagaatgattatataagtagaatgagaaaaatgaaattaagctaaaatgtgaaaactattttatcaaagactagaatgttctggagaatgat 267  Q
    |||||| ||||||||||||  || ||||||||||||||||  ||||| |||||    || | ||||||| ||| ||| ||||||||||||||||||||    
T  15842625 gttctgaagaatgattata--agcagaatgagaaaaatgatgttaagttaaaaataaaagattattttaacaaggaccagaatgttctggagaatgat 15842720  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 15842776 - 15842816
Alignment:
Q  313 tatttacgcagttgttttatcttggaccagaatgttttgga 353  Q
    |||||| ||| ||||||||||||||||||||||||| ||||    
T  15842776 tatttaagcaattgttttatcttggaccagaatgttctgga 15842816  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 20884255 - 20884291
Alignment:
Q  324 ttgttttatcttggaccagaatgttttggatgcagtt 360  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  20884255 ttgttttatcttggaccagaatgttctggaggcagtt 20884291  T

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Target: scaffold0334 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 12256 - 12295
Alignment:
Q  320 gcagttgttttatcttggaccagaatgttttggatgcagt 359  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  12256 gcagttgttttatcttggaccagaatgttctggaagcagt 12295  T

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Target: scaffold1655 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1655
Description:

Target: scaffold1655; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 1481 - 1509
Alignment:
Q  320 gcagttgttttatcttggaccagaatgtt 348  Q
    |||||||||||||||||||||||||||||    
T  1481 gcagttgttttatcttggaccagaatgtt 1509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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