View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20618_low_4 (Length: 817)
Name: NF20618_low_4
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 263 - 586
Target Start/End: Original strand, 45122349 - 45122673
Alignment:
| Q |
263 |
tcatccgtttgttaccgatttaaggaaaacaaaaatccaaacactagttcaaattagaagctgttttgagtagttcctccagaaaatcattttcgataac |
362 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45122349 |
tcatcagtttgttaccgatttaaggaaaacaaaaatccaaacactagttcaaattagaagctgttttgagtagttcctccagaaaatcattttcgataac |
45122448 |
T |
|
| Q |
363 |
tgatttcaaaatagaaagaaagnnnnnnn-tgtgattttcattatggtaatcaaacacaaaacaannnnnnnaaaatctctggatattaatctccaagag |
461 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45122449 |
tgatttaaaaatagaaagaaagaaaaaaaatgtgattttcattatggtaatcaaacgcaaaacaattttttgaaaatctctggatattaatctccaagag |
45122548 |
T |
|
| Q |
462 |
tcgtttgttacaacttattttgtnnnnnnntttactttttctttaaatataatcactcctgaaaattttcatctgtttgttacagattctttaaaaaatg |
561 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45122549 |
tcgtttgttagaacttattttgtaaaaaaatttagtttttctttaaatataatcactcctgaaaattttcatctgtttgttacagattctttaaaaaatg |
45122648 |
T |
|
| Q |
562 |
aaccaatctgaaaatattataaaaa |
586 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45122649 |
aaccaatctgaaaatattataaaaa |
45122673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 45122107 - 45122310
Alignment:
| Q |
14 |
aagaatatgaacttgattcaatgtccaacatttcagctttaccaagcctatcccacaaactaatttcagtttgctcgggaagctgatcaatttttgcatc |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45122107 |
aagaaaatgaacttgattcaatgtccaacatttcagctttaccaagcctgtcccacaaactaatttcagtttgctcgggaagctgatcaatttttgcatc |
45122206 |
T |
|
| Q |
114 |
ctctgcagattctctaagactaaaaataatttaaatcagttatcaacaactttagaaagcatattgaatccatgacaaaacattatgacatctcttgtta |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45122207 |
ctctgcagattctctaagactataaataatttaaatcagttatcaacaactttagaaagcatattgaatccatgacaaaacattatgacatctcttgtta |
45122306 |
T |
|
| Q |
214 |
cagc |
217 |
Q |
| |
|
|||| |
|
|
| T |
45122307 |
cagc |
45122310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 581 - 641
Target Start/End: Original strand, 45122714 - 45122774
Alignment:
| Q |
581 |
taaaaataattttcagtaagtgattttgttttcggtaaacaaacacaactccacttctgta |
641 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45122714 |
taaaaataattttcagtaagtgattttcttttcggtaaacaaacacaactccacttctgta |
45122774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 769 - 799
Target Start/End: Original strand, 45122828 - 45122858
Alignment:
| Q |
769 |
ggggagagtggaagaagagcgaggaaatcca |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45122828 |
ggggagagtggaagaagagcgaggaaatcca |
45122858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 40258211 - 40258266
Alignment:
| Q |
25 |
cttgattcaatgtccaacatttcagctttaccaagcctatcccacaaactaatttc |
80 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
40258211 |
cttgattcaacatccaacatttcagctttaccaagcctctcccacaagctaatttc |
40258266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University