View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_40 (Length: 386)
Name: NF20618_low_40
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 13944784 - 13945151
Alignment:
| Q |
1 |
ataaattcatttatatgtctatttcaactcatctctactatttaacattattatgagatacaatcatttagtttaatcagttttgtcattgattcttgtg |
100 |
Q |
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| T |
13944784 |
ataaattcatttatatgtctatttcaactcatctctactatttaacatta---tgagatacaatcatttagtttaatcagttttgtcattgattcttgtg |
13944880 |
T |
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| Q |
101 |
gtgtgttaaatgaccacgtgaatagtgagaacttatttcctttcgtgaaaagtttttggaaatttatactttaagtatagatgattacctccttaaacta |
200 |
Q |
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| T |
13944881 |
gtgtgttaaatgacgacgtgaatagtgagaacttatttcctttcgtgaaaagtttttggaaatttatactttaagtatagatgattacctccttaaacta |
13944980 |
T |
|
| Q |
201 |
caaattattagatattacactttca-nnnnnnnnngaaggggagatattatactttcatgtttagcatgtcacaccaatatttattttatatttcttacg |
299 |
Q |
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| T |
13944981 |
caaattattagatattatactttcattttttttttgaaggggagatattatactttcatgtttagcatgtcacaccaatatttattttatatttcttacg |
13945080 |
T |
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| Q |
300 |
acatttgtatcgtgtcaacatgagatacaacatacatgtatatgtgtctagtttactgtgaaggattttct |
370 |
Q |
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| T |
13945081 |
acatttgtatcgtgtcaacatgagatacaacatacatgtatatgtgtctagtttaccgtgaaggattttct |
13945151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 13939502 - 13939576
Alignment:
| Q |
280 |
tttattttatatttcttacgacatttg-tatcgtgtcaacatgagatacaacatacatgtatatgtgtctagttt |
353 |
Q |
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| T |
13939502 |
tttattttacatttcttacaacatttgatattgcatcagcatgggatacatcatacatgtatatgcgtctagttt |
13939576 |
T |
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