View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_42 (Length: 381)
Name: NF20618_low_42
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 112 - 366
Target Start/End: Complemental strand, 40441278 - 40441024
Alignment:
| Q |
112 |
caatttgatgaagataccggtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaataacctc |
211 |
Q |
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| T |
40441278 |
caatttgatgaagataccagtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaataacctc |
40441179 |
T |
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| Q |
212 |
taacttaaaacatagtttcttagttgtctccaagtccaagaagttgtgggtgctaccactatcaaggaagacttgtaatgatttcttgtcatgcattccc |
311 |
Q |
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| T |
40441178 |
taacttaaaacatagtttcttagttgtctccaagtccaagaagttgtgggtgctaccactatcaaggaagacttgtaatgatttcttgtcatgcattccc |
40441079 |
T |
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| Q |
312 |
aaaactcacacaggttagtaatttgcaatgcagttatggcttgaagggagagatg |
366 |
Q |
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| T |
40441078 |
aaaactcacacaggttagtaatttgcaatgcagttatggcttgaagggagagatg |
40441024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 40441576 - 40441466
Alignment:
| Q |
4 |
cgaagaatattcagtacagcaattaggatggctactgcataaaactcggaagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatt |
103 |
Q |
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| T |
40441576 |
cgaaaaatattcagtacagcaattaggatggctactgcataaaactcggaagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatt |
40441477 |
T |
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| Q |
104 |
tcaagctacaa |
114 |
Q |
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| T |
40441476 |
tcaagctacaa |
40441466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 12664890 - 12664953
Alignment:
| Q |
51 |
ggaagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa |
114 |
Q |
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| T |
12664890 |
ggaagtctcaaattcaagagtgtagtaaagcttatggagcatcgtcaataacttcaacctacaa |
12664953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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