View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_44 (Length: 369)

Name: NF20618_low_44

Description: NF20618

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20618_low_44

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 158; E-Value: 5e-84

Query Start/End: Original strand, 17 - 182

Target Start/End: Original strand, 37929125 - 37929290

Alignment:

Q	17	tattctctcttatccaatctgtggtgaaatttattcatggatatcatgtgtacaaattttttgtcatccctatttactgttgcttattatatatgtctaa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37929125	tattctctcttatccaatctttggtgaaatttattcatggatatcatgtgtacaaattttttgtcatccctgtttactgttgcttattatatatgtctaa	37929224	T

Q	117	ctcgaacaaagtgaggtaaatatactagcgtgtgtatagaacaaattgtgttaatttaatttagac	182	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37929225	ctcgaacaaagtgaggtaaatatactagcgtgtgtatagaacaaattgtgttaatttaatttagac	37929290	T

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Target: chr4; HSP #2

Raw Score: 48; E-Value: 2e-18

Query Start/End: Original strand, 267 - 314

Target Start/End: Original strand, 37929368 - 37929415

Alignment:

Q	267	gttggataggattaaataatatatgtattttgttgagatactcatgtc	314	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37929368	gttggataggattaaataatatatgtattttgttgagatactcatgtc	37929415	T

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