View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_47 (Length: 359)
Name: NF20618_low_47
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16027254 - 16027015
Alignment:
| Q |
1 |
ttttaaagatgaataatttctctcgttgaattaatattaaaatattatagaatcgagatctggtatataaaaaagttggagttgcagaacgaaatttaga |
100 |
Q |
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| T |
16027254 |
ttttaaagaagaataatttctctcgttgaattaatattaaaatattatagaatcaagatgtggtatataaaaaagttggagttgcagaatgaaatttagc |
16027155 |
T |
|
| Q |
101 |
atatgttaaactgaaatttgaaatatatcctgctatagaaattccactagacattcatgaaggtgagaaagaccgtgcgtatcactcgacattgagtgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16027154 |
atatgttaaactgaaatttgaaatatatcctgctatagaaattccactagacactcatgaaggtgagaaagaccgtgcgtatcactcgacattgagtgac |
16027055 |
T |
|
| Q |
201 |
acgaccatgcgctcctgtggaacgaacatacgctcctatg |
240 |
Q |
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| T |
16027054 |
acgaccatgcgctcctgtggcacgaacatacgctcctatg |
16027015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 16025730 - 16025607
Alignment:
| Q |
232 |
gctcctatggcacgaccgtgtgtcctgttctctgcgcgggaagtcagatttttagttgtttttcagttttt-aagtgcaccaatgggtctcaaacaccta |
330 |
Q |
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|||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16025730 |
gctcttatggcacgaccgtgtgtcctatcctctgcacgggaagtcagatttttagttgtttttcagtttttaaagtgcaccaatgggtctcaaacaccta |
16025631 |
T |
|
| Q |
331 |
aacttagttaattgaagtataatt |
354 |
Q |
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| T |
16025630 |
aacttagttaattgaagtataatt |
16025607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 16757769 - 16757653
Alignment:
| Q |
239 |
tggcacgaccgtgtgtcctgttctctgcgcgggaagtcagatttttagttgtttttcagtttttaagtgc--accaatgggtctcaaacacctaaactta |
336 |
Q |
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| T |
16757769 |
tggcatgaccgcgtgacctgtcttgtgcgcgggaagtccgatttttcgttgtttttcagttttaaag-gcataccaatgaatcccaaacacctaaactta |
16757671 |
T |
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| Q |
337 |
gttaattgaagtataatt |
354 |
Q |
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||||||||| |||||||| |
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| T |
16757670 |
gttaattgatgtataatt |
16757653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 511441 - 511483
Alignment:
| Q |
312 |
aatgggtctcaaacacctaaacttagttaattgaagtataatt |
354 |
Q |
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| T |
511441 |
aatgggtcccaaacacctaaacttagttaattgaggtgtaatt |
511483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 11620771 - 11620823
Alignment:
| Q |
296 |
agtttttaagtgcaccaatgggtctcaaacacctaaacttagttaattgaagt |
348 |
Q |
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||||||||||| || |||| |||||||||||||||||||| ||| ||||||| |
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| T |
11620771 |
agtttttaagtatactaatgagtctcaaacacctaaacttaattacttgaagt |
11620823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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