View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_48 (Length: 356)
Name: NF20618_low_48
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 38715496 - 38715171
Alignment:
| Q |
17 |
ttgaatatatttggcactttttaaagaagacatgtcattggattgaatttacattctcaactaatttggattcattgagtggtttgtgtgtcttagctcc |
116 |
Q |
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| T |
38715496 |
ttgaatatatttggcactttttaaagaggacatgtcattggattgaatttacattctcaactaatttggattcattgagtggtttgtgtgtcttagctcc |
38715397 |
T |
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| Q |
117 |
atatttgtagttgtctacaaagagtaaattctagctatttttggggaggaatttatcatagggtaaaagaaattcaatataatgtcttcnnnnnnnnttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
38715396 |
atatttgtagttgtctacaaagagtaaattctagctatttttggggaggaatttatcataggttaaaagaaattcaatataatgtcttc-aaaaaaattc |
38715298 |
T |
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| Q |
217 |
aaagacagtttctacgatcaaagtgcttctcaattcttgtaatcatggtgatgtttcatataatcacggcgagacaccatcgataaaaactatactttag |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |
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| T |
38715297 |
aaagacagtttctacgatgaaagtgcttctcaattcttgtaatcatggtgatgtttcacataatcacagcgagacaccgtcgataaaaactatactttgg |
38715198 |
T |
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| Q |
317 |
agtttcaacaaaataaaaactcgatat |
343 |
Q |
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| ||||||||||| |||||||| |||| |
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| T |
38715197 |
aatttcaacaaaacaaaaactccatat |
38715171 |
T |
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