View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_49 (Length: 356)
Name: NF20618_low_49
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 36439458 - 36439787
Alignment:
| Q |
10 |
attatacttaatacgaaattcaacaaacaatttataagtgtcaaaatcaaatctaatatactatttataaaaatttgaccattgattgttctaatttgag |
109 |
Q |
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| T |
36439458 |
attatacttaatacgaaattcaacaaacaatttataagtgtcaaaatcaaatctaatatactatttataaaaatttgaccattgattgttctaatttgag |
36439557 |
T |
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| Q |
110 |
tttgttacgacataggtccacgaggagggttcaacctaaaatatcagtcatatagataggatagcctcataaattaaatattactttctgttttctactt |
209 |
Q |
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| T |
36439558 |
tttgttacgacataggtccatgaggagggttcaacctaaaatatcagtcgtataaataggatagtctcataaatcaaatactactttctgttttctactc |
36439657 |
T |
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| Q |
210 |
aatgtaaaactcgtaacatttccactctatttaagagtaagcatcctttgcggattttactttatcaggctcatcggggtggtagtcatttctctctttt |
309 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36439658 |
aatgtgaaactcgtaacatttccactctatttaagagtaagcatcctttgcggattttactttatcaggctcatcggggtggtagtcatttctctctttt |
36439757 |
T |
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| Q |
310 |
gaggtttcgctcatctatcactattcaact |
339 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
36439758 |
gaggtttcgctaatctatcactattcaact |
36439787 |
T |
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