View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_5 (Length: 748)

Name: NF20618_low_5
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_5
NF20618_low_5
[»] chr4 (17 HSPs)
chr4 (410-734)||(32061533-32061852)
chr4 (195-406)||(32061234-32061463)
chr4 (62-190)||(6607399-6607527)
chr4 (35-166)||(31846819-31846959)
chr4 (265-389)||(38309210-38309334)
chr4 (62-169)||(6608375-6608482)
chr4 (61-166)||(31012152-31012257)
chr4 (34-87)||(30023481-30023534)
chr4 (136-194)||(53261089-53261148)
chr4 (130-182)||(30023639-30023692)
chr4 (38-117)||(11392303-11392380)
chr4 (35-87)||(30023652-30023703)
chr4 (44-112)||(54223561-54223629)
chr4 (42-93)||(53261096-53261147)
chr4 (158-196)||(31012258-31012296)
chr4 (59-117)||(34025457-34025515)
chr4 (49-102)||(38324924-38324977)
[»] chr7 (11 HSPs)
chr7 (36-169)||(17272699-17272832)
chr7 (36-115)||(7211860-7211939)
chr7 (35-169)||(29681764-29681897)
chr7 (35-116)||(25099327-25099408)
chr7 (54-145)||(7211947-7212038)
chr7 (38-87)||(32315709-32315758)
chr7 (54-103)||(32315790-32315839)
chr7 (36-116)||(46282868-46282949)
chr7 (64-117)||(35418201-35418254)
chr7 (35-115)||(4911698-4911778)
chr7 (63-169)||(43500011-43500114)
[»] chr3 (18 HSPs)
chr3 (38-182)||(31342009-31342153)
chr3 (35-169)||(11512386-11512520)
chr3 (64-194)||(20286932-20287062)
chr3 (35-169)||(22893925-22894058)
chr3 (265-369)||(31546212-31546316)
chr3 (36-87)||(29081706-29081757)
chr3 (265-413)||(37990038-37990179)
chr3 (34-87)||(26043511-26043564)
chr3 (47-116)||(36738272-36738341)
chr3 (35-73)||(49159508-49159546)
chr3 (278-352)||(49683456-49683530)
chr3 (55-116)||(20496554-20496614)
chr3 (44-85)||(32385366-32385407)
chr3 (44-89)||(36738366-36738411)
chr3 (42-87)||(48342793-48342838)
chr3 (35-71)||(48342207-48342243)
chr3 (137-187)||(22894000-22894051)
chr3 (63-104)||(16205736-16205777)
[»] chr2 (10 HSPs)
chr2 (35-182)||(7755335-7755482)
chr2 (36-169)||(39819054-39819196)
chr2 (35-169)||(15562203-15562337)
chr2 (60-169)||(12918557-12918666)
chr2 (265-384)||(32840488-32840607)
chr2 (42-111)||(13421772-13421841)
chr2 (266-383)||(7077391-7077507)
chr2 (38-84)||(5095752-5095798)
chr2 (159-196)||(12918665-12918702)
chr2 (159-196)||(39819195-39819232)
[»] chr1 (15 HSPs)
chr1 (34-169)||(28739338-28739473)
chr1 (34-169)||(50754722-50754857)
chr1 (64-190)||(15928077-15928204)
chr1 (60-166)||(9884865-9884971)
chr1 (60-169)||(9379842-9379951)
chr1 (60-160)||(6539593-6539693)
chr1 (35-169)||(28045318-28045452)
chr1 (34-190)||(10449451-10449616)
chr1 (42-87)||(10449454-10449499)
chr1 (54-87)||(28810067-28810100)
chr1 (64-113)||(49515348-49515397)
chr1 (34-72)||(718980-719018)
chr1 (33-87)||(45215268-45215322)
chr1 (136-169)||(35251201-35251234)
chr1 (159-188)||(50754729-50754758)
[»] chr6 (9 HSPs)
chr6 (33-169)||(11448054-11448190)
chr6 (41-169)||(2543769-2543896)
chr6 (42-115)||(369498-369571)
chr6 (42-87)||(16193836-16193881)
chr6 (47-103)||(2980786-2980842)
chr6 (42-89)||(28581738-28581785)
chr6 (62-116)||(1879187-1879241)
chr6 (62-103)||(178660-178701)
chr6 (136-190)||(369519-369574)
[»] chr5 (12 HSPs)
chr5 (41-169)||(5215594-5215723)
chr5 (35-165)||(9177874-9178004)
chr5 (35-166)||(29385313-29385453)
chr5 (44-116)||(23219360-23219432)
chr5 (60-169)||(19417469-19417577)
chr5 (64-116)||(1839999-1840051)
chr5 (65-155)||(36568733-36568823)
chr5 (41-116)||(896274-896349)
chr5 (48-87)||(12605662-12605701)
chr5 (35-87)||(22097490-22097542)
chr5 (54-105)||(42772054-42772105)
chr5 (60-117)||(7137665-7137722)
[»] chr8 (5 HSPs)
chr8 (62-154)||(43465112-43465204)
chr8 (44-83)||(33763466-33763505)
chr8 (60-116)||(6894076-6894132)
chr8 (63-113)||(33763539-33763589)
chr8 (48-93)||(45051339-45051384)
[»] scaffold1315 (2 HSPs)
scaffold1315 (41-83)||(1818-1860)
scaffold1315 (130-195)||(1811-1877)
[»] scaffold1293 (2 HSPs)
scaffold1293 (41-83)||(211-253)
scaffold1293 (130-195)||(194-260)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 410 - 734
Target Start/End: Original strand, 32061533 - 32061852
Alignment:
Q  410 ttataacagatgtacgtaatcaatgtctattttaattgttgcgtttgtatatagtttggcctaacggcctcctttttatcgaagnnnnnnnnnnnnnnng 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||               |    
T  32061533 ttataacagatgtacgtaatcaatgtctattttaattgttgcgtttgtatgtagtttgacctaacggcctcctttttatcgaagaaaaaaaaaa-----g 32061627  T
Q  510 gagcatagcaagcccaaagcccctacgccgcgacgatagttaggacatctactaaagatcataattctaattactatggattagaagaaaaaagaagatg 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061628 gagcatagcaagcccaaagcccctacgccgcgacgatagttaggacatctactaaagatcataattctaattactatggattagaagaaaaaagaagatg 32061727  T
Q  610 aaataataatttcctatcaatannnnnnngttgtattttcatgttaaccaatggaaagatgtttacggatgccatatactcacctcatctttttgcctaa 709  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32061728 aaataataatttcctatcaatatttttttgttgtattttcatgttaaccaatggaaagatgtttacggatgccatatactcacctcatctttttgcctaa 32061827  T
Q  710 ggagatattccgaaccgtccacctt 734  Q
    |||||||||||||||||||||||||    
T  32061828 ggagatattccgaaccgtccacctt 32061852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 195 - 406
Target Start/End: Original strand, 32061234 - 32061463
Alignment:
Q  195 gtggttaggtggttttggccgaaatttgggactatttttcgatgctcatgtcaaaactttggagaatata------------------tttggttaataa 276  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||                  ||||||||||||    
T  32061234 gtggttaggtggttttggccgaaatttggggctatttttcggtgctcatgtcaaaactttggagaatatactcggctattgtagtatctttggttaataa 32061333  T
Q  277 ggggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggataccgtttctcatatttacaggcat 376  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  32061334 ggggtgtccttcgactcacccttgcttttttattgtctccctcattaatcgccttatcatgaaggattgacaggctaccgtttctcatatttacaggcat 32061433  T
Q  377 gcaaaccaggtagatagctgactggcttgc 406  Q
    ||||| ||||||||||||||||||||||||    
T  32061434 gcaaatcaggtagatagctgactggcttgc 32061463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 6607527 - 6607399
Alignment:
Q  62 ggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgtaat 161  Q
    ||||||||||  |||||| ||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  162 gtcaccaaccacaatgtcaccaaagtatt 190  Q
    ||||||||||||||||||||| |||||||    
T  6607427 gtcaccaaccacaatgtcacctaagtatt 6607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 31846959 - 31846819
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggt---------caaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnn 125  Q
    |||||||||||||||||| ||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||||||             
T  31846959 gggtagcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttttt 31846860  T
Q  126 gttgttttgcacacttgtaacattgtggttcgtaatgtcac 166  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  31846859 gttgttttgcacacttgtaacattttggttggtaatgtcac 31846819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 38309334 - 38309210
Alignment:
Q  265 tttggttaataaggggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggataccgtttctcat 364  Q
    |||| |||||||||||||||||||||  || | ||||||||  |||||||||||| ||||||||  ||| |||||||||| | | | ||||||||||||     
T  38309334 tttgattaataaggggtgtccctcgattcatcattgcttttccattgtctccctcgttaatcgttgtatgatgaaggattaacacgttaccgtttctcac 38309235  T
Q  365 atttacaggcatgcaaaccaggtag 389  Q
    ||||| ||| | |||||||||||||    
T  38309234 atttataggtaggcaaaccaggtag 38309210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 6608375 - 6608482
Alignment:
Q  62 ggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgtaat 161  Q
    ||||||||||| |||||| ||||||| | ||||||| ||||||||||||||| | |        ||||||||||| |||||||||||||||||| |||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttcaaagattctttttgttgttttgcagacttgtaacattgtggttggtaat 6608474  T
Q  162 gtcaccaa 169  Q
    ||||||||    
T  6608475 gtcaccaa 6608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 31012152 - 31012257
Alignment:
Q  61 tggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgtaa 160  Q
    |||||||||||  |||||||||||||| ||||| |||| |||||||||||||||||         ||||||||||| |||||||| ||||||||| ||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaa 31012251  T
Q  161 tgtcac 166  Q
    ||||||    
T  31012252 tgtcac 31012257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 30023481 - 30023534
Alignment:
Q  34 tgggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    |||||||||||| |||||  |||||||||||||||||||||||||| |||||||    
T  30023481 tgggtagcacttaggtgatattgtggttggtgacattggtcaaccataatgtca 30023534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 53261148 - 53261089
Alignment:
Q  136 acacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcaccaaagtattttcc 194  Q
    |||| ||| ||||||||||| || |||||||||||||||||||||||| |||||||||||    
T  53261148 acacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcacctaagtattttcc 53261089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 30023639 - 30023692
Alignment:
Q  130 ttttgcacacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcacc 182  Q
    ||||| |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  30023639 ttttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacc 30023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 11392303 - 11392380
Alignment:
Q  38 tagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaa 117  Q
    ||||||||||||||| ||||||||| ||| ||||| | |||||||||||| |   ||||||||||| | |||||||||||    
T  11392303 tagcacttgggtgacattgtggttgatgaaattggcctaccacaatgtcaca--aggctttcttctctctctttcacaaa 11392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 30023703 - 30023652
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    |||||||||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  30023703 gggtagcact-gggtgacattgtggttggtgacattgaccaaccacaatgtca 30023652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 54223561 - 54223629
Alignment:
Q  44 ttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttc 112  Q
    |||| |||| ||||||||||||||||||  |||||||||||||| |  || ||||||||||| ||||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 53261096 - 53261147
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtg 93  Q
    |||| |||||| ||||||||||||||||||  |||||||||||||| |||||    
T  53261096 acttaggtgacattgtggttggtgacattgaccaaccacaatgtcacatgtg 53261147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 31012258 - 31012296
Alignment:
Q  158 taatgtcaccaaccacaatgtcaccaaagtattttccgt 196  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  31012258 taatgtcaccaaccacaatgtcacctaagtattatccgt 31012296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 34025457 - 34025515
Alignment:
Q  59 gttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaa 117  Q
    ||||||||||||| ||||||| ||| |||||  ||||||| |||||| |||||||||||    
T  34025457 gttggtgacattgatcaaccataatatcataaatggcttttttctttctctttcacaaa 34025515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 38324977 - 38324924
Alignment:
Q  49 tgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttc 102  Q
    |||| ||||||||||||| ||||| |||||| ||| ||| ||||||||||||||    
T  38324977 tgacattgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 17272699 - 17272832
Alignment:
Q  36 ggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgc 135  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||         ||||||||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgc 17272798  T
Q  136 acacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    |||||||||||||||||||| |||||||||||||    
T  17272799 acacttgtaacattgtggttggtaatgtcaccaa 17272832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 7211860 - 7211939
Alignment:
Q  36 ggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcaca 115  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 29681764 - 29681897
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttg 134  Q
    |||||||| || |||||| ||||||||||||||||||| ||||||||| |||| |||||||||| || ||||| ||| ||||         ||||||||     
T  29681764 gggtagcattttggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggcttt-tttttttttttttacaagatatttttgttgtttta 29681862  T
Q  135 cacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    ||||||||||||||||||||| |||||||||||||    
T  29681863 cacacttgtaacattgtggttggtaatgtcaccaa 29681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 25099408 - 25099327
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    |||||||||||| ||||  |||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  25099408 gggtagcacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 7212038 - 7211947
Alignment:
Q  54 ttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaa 145  Q
    ||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||||||||||         ||||||||||||||||||||    
T  7212038 ttgtggtgggagacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 32315709 - 32315758
Alignment:
Q  38 tagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  32315709 tagcacttgcgtgacattgtggttggtgacattggccaaccacaatgtca 32315758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 32315839 - 32315790
Alignment:
Q  54 ttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttct 103  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  32315839 ttgtggttggtgacattggtcaactacaatgtcagaagtggctttcttct 32315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 46282868 - 46282949
Alignment:
Q  36 ggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtgg-ctttcttctttttctttcacaa 116  Q
    ||||||||||| ||||| |||| |||||||||||||| |||||||||| ||| | ||||  |||||||||| ||||||||||    
T  46282868 ggtagcacttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaa 46282949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 35418201 - 35418254
Alignment:
Q  64 tgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaa 117  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||||| |||||    
T  35418201 tgacattggtcaaccacaatatcacatgtgactttctcctttttcttttacaaa 35418254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 4911778 - 4911698
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcaca 115  Q
    ||||| |||||||||||| ||||| | ||||| |||||||||| | ||||||| | |||  |||||||||| |||||||||    
T  4911778 gggtaacacttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttctttctctttcaca 4911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 43500011 - 43500114
Alignment:
Q  63 gtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgtaatg 162  Q
    |||| ||||||||| |||||||||| || || | ||||||||||||||||||||         ||||||||| ||  |||||||||||||||| ||||||    
T  43500011 gtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcacaa--tttttttgttgttttgtac-tttgtaacattgtggttggtaatg 43500107  T
Q  163 tcaccaa 169  Q
    |||||||    
T  43500108 tcaccaa 43500114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 31342009 - 31342153
Alignment:
Q  38 tagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcac 137  Q
    ||||| |||| |||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||         ||||||||||||    
T  31342009 tagcatttggatgacattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcac 31342108  T
Q  138 acttgtaacattgtggttcgtaatgtcaccaaccacaatgtcacc 182  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  31342109 acttgtaacattgtggttggtaatgtcaccaaccacaatgtcacc 31342153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 11512386 - 11512520
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttg 134  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||         | |||||||    
T  11512386 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttg 11512485  T
Q  135 cacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    ||||||||||||||||||||| |||||||||||||    
T  11512486 cacacttgtaacattgtggttggtaatgtcaccaa 11512520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 20286932 - 20287062
Alignment:
Q  64 tgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgtaatgt 163  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||| |||||||    
T  20286932 tgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgt 20287031  T
Q  164 caccaaccacaatgtcaccaaagtattttcc 194  Q
    ||||||||||||||||||| || ||||||||    
T  20287032 caccaaccacaatgtcacccaaatattttcc 20287062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 22894058 - 22893925
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttg 134  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||||| | ||| ||||||||||||||||| || ||        |||||||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaac-aagattttttgttgttttg 22893960  T
Q  135 cacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
     |||||||||||||||||||| |||||||||||||    
T  22893959 tacacttgtaacattgtggttggtaatgtcaccaa 22893925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 31546212 - 31546316
Alignment:
Q  265 tttggttaataaggggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggataccgtttctcat 364  Q
    ||||||||||||||||||||||||||| ||  ||||||||| |||||||| |||||||||| | ||||| ||||||||||| |||| ||  |||||||||    
T  31546212 tttggttaataaggggtgtccctcgactcattcttgcttttctattgtcttcctcattaattgccttatgatgaaggattggtaggttatagtttctcat 31546311  T
Q  365 attta 369  Q
    |||||    
T  31546312 attta 31546316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 29081757 - 29081706
Alignment:
Q  36 ggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29081757 ggtagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtca 29081706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 37990179 - 37990038
Alignment:
Q  265 tttggttaataaggggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggataccgtttctcat 364  Q
    ||||||||||||||||||||  ||||| || | |||||||| | |||||| |||||||||||| |   | |||||||||||| | | ||| |||||||||    
T  37990179 tttggttaataaggggtgtctttcgactcatcgttgcttttatcttgtcttcctcattaatcgcc---tgatgaaggattgacaagttacagtttctcat 37990083  T
Q  365 atttacaggcatgcaaaccaggtagatagctgactggcttgcgggttat 413  Q
    ||||  ||||| ||||| ||||    |||||||||||||||||| ||||    
T  37990082 atttgtaggcaggcaaatcagg----tagctgactggcttgcggattat 37990038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 26043511 - 26043564
Alignment:
Q  34 tgggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||||| |||||||| || |||||||||||| |||||||||||||||    
T  26043511 tgggtagcacttgtgtgacgttttgattggtgacattgatcaaccacaatgtca 26043564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 36738272 - 36738341
Alignment:
Q  47 ggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    ||||| |||||||||||||| |||||||||||||||| ||| | ||| ||||||||||| | ||||||||    
T  36738272 ggtgatgttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttctttctttttcacaa 36738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 49159546 - 49159508
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggt 73  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  49159546 gggtagcacttgggtgacattgtggttggtgacattggt 49159508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 49683456 - 49683530
Alignment:
Q  278 gggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggat 352  Q
    |||||||||||||| || |||||||||| ||| ||||  ||||||||| | ||||| |||||||||||| |||||    
T  49683456 gggtgtccctcgacacatccttgcttttctatcgtctttctcattaattgccttatgatgaaggattgacaggat 49683530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 20496614 - 20496554
Alignment:
Q  55 tgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    ||||||||||||||||| ||||||||||||||| | ||| ||||||||| | ||||||||||    
T  20496614 tgtggttggtgacattg-tcaaccacaatgtcacacgtgactttcttctctctctttcacaa 20496554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 32385366 - 32385407
Alignment:
Q  44 ttgggtgacgttgtggttggtgacattggtcaaccacaatgt 85  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgt 32385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 36738411 - 36738366
Alignment:
Q  44 ttgggtgacgttgtggttggtgacattggtcaaccacaatgtcata 89  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||    
T  36738411 ttgggtgacattgtggttggtgacattggtcaactacaatatcata 36738366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 48342793 - 48342838
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||    
T  48342793 acttgggtgacattatggttggcgacattggtcaaccacaatgtca 48342838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 48342207 - 48342243
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattg 71  Q
    |||||||||||||||||| ||||||||||||||||||    
T  48342207 gggtagcacttgggtgacattgtggttggtgacattg 48342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 22894000 - 22894051
Alignment:
Q  137 cacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcaccaaagt 187  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||| ||||    
T  22894000 cacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagt 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 16205736 - 16205777
Alignment:
Q  63 gtgacattggtcaaccacaatgtcatatgtggctttcttctt 104  Q
    ||||||||| ||||||||||||||| | ||||||||||||||    
T  16205736 gtgacattgatcaaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 7755335 - 7755482
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttg 134  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||| |||||||||||| ||||         |||||||||    
T  7755335 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttg 7755434  T
Q  135 cacacttgtaacattgtggttcgtaatgtcaccaaccacaatgtcacc 182  Q
     ||||||||||||||||| || ||||||||||||||||||||||||||    
T  7755435 tacacttgtaacattgtgattggtaatgtcaccaaccacaatgtcacc 7755482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 39819054 - 39819196
Alignment:
Q  36 ggtagcacttgggtgacgttgtggttggtgacattggt---------caaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnng 126  Q
    ||||||||||||||||| ||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||||||         |    
T  39819054 ggtagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttg 39819153  T
Q  127 ttgttttgcacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  39819154 ttgttttgcacacttgtaatattgtggttggtaatgtcaccaa 39819196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 15562203 - 15562337
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttg 134  Q
    |||||||| ||||||||| ||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||  |||||           |||||||||    
T  15562203 gggtagcatttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttg 15562302  T
Q  135 cacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    |||||||||||||||||| || |||||||||||||    
T  15562303 cacacttgtaacattgtgattggtaatgtcaccaa 15562337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 12918557 - 12918666
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgta 159  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||||||||| ||         ||||||||||||| |||||||||||||||| |||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggta 12918656  T
Q  160 atgtcaccaa 169  Q
    ||||||||||    
T  12918657 atgtcaccaa 12918666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 32840488 - 32840607
Alignment:
Q  265 tttggttaataaggggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggataccgtttctcat 364  Q
    |||| ||||||||||| ||||||||||  | |||||||||| |||  || ||||||||||||  ||||| ||||| |||||| ||| |||||||||||||    
T  32840488 tttgattaataaggggcgtccctcgacttatccttgcttttctatgttccccctcattaatcaccttatgatgaaagattgacaggttaccgtttctcat 32840587  T
Q  365 atttacaggcatgcaaacca 384  Q
    ||||| ||||| ||||||||    
T  32840588 atttataggcaggcaaacca 32840607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 13421841 - 13421772
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttcttt 111  Q
    ||||||||||| ||||||||||||||||||  ||||||||| || | ||||| ||||||| |||||||||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttt 13421772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 383
Target Start/End: Original strand, 7077391 - 7077507
Alignment:
Q  266 ttggttaataaggggtgtccctcgacccacccttgcttttttattgtctccctcattaatcgtcttatcatgaaggattgataggataccgtttctcata 365  Q
    ||||||||||| ||| |||| ||||| ||   ||||||||| ||||||||  |||||||||||||||| ||||||||  ||||  ||| |||||||||||    
T  7077391 ttggttaataatgggcgtccttcgactcatttttgctttttgattgtctctttcattaatcgtcttatgatgaaggaccgata-tataacgtttctcata 7077489  T
Q  366 tttacaggcatgcaaacc 383  Q
     ||| | ||| |||||||    
T  7077490 attatatgcaagcaaacc 7077507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 5095752 - 5095798
Alignment:
Q  38 tagcacttgggtgacgttgtggttggtgacattggtcaaccacaatg 84  Q
    ||||||||||||||  ||||||||||||||||| | |||||||||||    
T  5095752 tagcacttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 12918665 - 12918702
Alignment:
Q  159 aatgtcaccaaccacaatgtcaccaaagtattttccgt 196  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  12918665 aatgtcaccaaccacaatgtcacccaagtattatccgt 12918702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 39819195 - 39819232
Alignment:
Q  159 aatgtcaccaaccacaatgtcaccaaagtattttccgt 196  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  39819195 aatgtcaccaaccacaatgtcacccaagtattatccgt 39819232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 28739473 - 28739338
Alignment:
Q  34 tgggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgtttt 133  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||         ||| ||||    
T  28739473 tgggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttatttt 28739374  T
Q  134 gcacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    |||||||||||||||||||||| |||||||||||||    
T  28739373 gcacacttgtaacattgtggttggtaatgtcaccaa 28739338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 34 - 169
Target Start/End: Original strand, 50754722 - 50754857
Alignment:
Q  34 tgggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgtttt 133  Q
    ||||||| |||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||         ||||||||    
T  50754722 tgggtagtactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgtttt 50754821  T
Q  134 gcacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    ||||||||||||||||||||||  ||||||||||||    
T  50754822 gcacacttgtaacattgtggttgataatgtcaccaa 50754857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 15928204 - 15928077
Alignment:
Q  64 tgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa-annnnnnnngttgttttgcacacttgtaacattgtggttcgtaatg 162  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |        ||||||||| ||||||||||||||||||||  |||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatg 15928105  T
Q  163 tcaccaaccacaatgtcaccaaagtatt 190  Q
    ||||||| |||||||||||| |||||||    
T  15928104 tcaccaatcacaatgtcacccaagtatt 15928077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 9884865 - 9884971
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgta 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||  ||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgata 9884964  T
Q  160 atgtcac 166  Q
    |||||||    
T  9884965 atgtcac 9884971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 9379842 - 9379951
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgta 159  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||    
T  9379842 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 9379941  T
Q  160 atgtcaccaa 169  Q
    |||| |||||    
T  9379942 atgttaccaa 9379951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 6539693 - 6539593
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgta 159  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  160 a 160  Q
    |    
T  6539593 a 6539593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 28045318 - 28045452
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa-annnnnnnngttgtttt 133  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| ||||||| | ||||||||||||||||||||| |||| |         |||||||    
T  28045318 gggtagcacttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgtttt 28045416  T
Q  134 gcacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    | |||||||||||||||||||| |||||||||||||    
T  28045417 gtacacttgtaacattgtggttggtaatgtcaccaa 28045452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 10449616 - 10449451
Alignment:
Q  34 tgggtagcacttgggtgacgttgtggttggtgac--------attggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnn 125  Q
    |||||||||||||| |||| ||||||||||||||        |||||||||||||||||||| |  |  ||||||||||| ||||||||||             
T  10449616 tgggtagcacttggatgacattgtggttggtgacattgtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatattttttt 10449517  T
Q  126 gttgttttgcacacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcaccaaagtatt 190  Q
    |||  |||| |||||||| ||||||||||| || |||||||||||||||||||||||| |||||||    
T  10449516 gtttctttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtatt 10449451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10449454 - 10449499
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||    
T  10449454 acttgggtgacattgtggttggtgacattgaccaaccacaatgtca 10449499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 28810100 - 28810067
Alignment:
Q  54 ttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||||||||||||||||||||||||||    
T  28810100 ttgtggttggtgacattggtcaaccacaatgtca 28810067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 49515397 - 49515348
Alignment:
Q  64 tgacattggtcaaccacaatgtcatatgtggctttcttctttttctttca 113  Q
    |||||||||||||||| ||||||||| ||||||||||||| | |||||||    
T  49515397 tgacattggtcaaccataatgtcataagtggctttcttctatctctttca 49515348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 718980 - 719018
Alignment:
Q  34 tgggtagcacttgggtgacgttgtggttggtgacattgg 72  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  718980 tgggtagcacttgagtgacattgtggttggtgacattgg 719018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 45215322 - 45215268
Alignment:
Q  33 gtgggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    |||||||||||||||||||| || ||   | ||||||||||||||||||||||||    
T  45215322 gtgggtagcacttgggtgacattatgaaagatgacattggtcaaccacaatgtca 45215268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 35251234 - 35251201
Alignment:
Q  136 acacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    |||||||||||||||||||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaa 35251201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 50754758 - 50754729
Alignment:
Q  159 aatgtcaccaaccacaatgtcaccaaagta 188  Q
    ||||||||||||||||||||||||||||||    
T  50754758 aatgtcaccaaccacaatgtcaccaaagta 50754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 11448054 - 11448190
Alignment:
Q  33 gtgggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttt 132  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||| ||||| ||||||||||||||||||        |||||||    
T  11448054 gtgggtagcacttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttt 11448153  T
Q  133 tgcacacttgtaacattgtggttcgtaatgtcaccaa 169  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  11448154 tgcacacttataacattgtggttggtaatgtcaccaa 11448190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 2543896 - 2543769
Alignment:
Q  41 cacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacact 140  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||||        |||||||| ||||||    
T  2543896 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaaa-tttttttgttgttttacacact 2543798  T
Q  141 tgtaacattgtggttcgtaatgtcaccaa 169  Q
    ||||||||||||||| |||||||||||||    
T  2543797 tgtaacattgtggttggtaatgtcaccaa 2543769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 369571 - 369498
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcaca 115  Q
    ||||| ||||| ||||||||||||||||||  |||||||||||||| | ||| ||||||||||| |||||||||    
T  369571 acttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 16193881 - 16193836
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  16193881 acttgggtgacattgtggttggtgacattggtcaaccacaatgtca 16193836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 2980842 - 2980786
Alignment:
Q  47 ggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttct 103  Q
    |||||| ||||||||||||| |||||||||||| ||||||| | |||||||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttct 2980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 28581738 - 28581785
Alignment:
Q  42 acttgggtgacgttgtggttggtgacattggtcaaccacaatgtcata 89  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  28581738 acttggctgacattgtggttggtgacattggccaaccacaatgtcata 28581785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 1879187 - 1879241
Alignment:
Q  62 ggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | | ||||||||    
T  1879187 ggtgacattggtcaaccacaatgtcataagtgactttcttctctatttttcacaa 1879241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 178660 - 178701
Alignment:
Q  62 ggtgacattggtcaaccacaatgtcatatgtggctttcttct 103  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  178660 ggtgacattgatcaaccacaatgtcacatgtggctttcttct 178701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 369519 - 369574
Alignment:
Q  136 acacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcaccaaagtatt 190  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||  |||||||    
T  369519 acacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagtatt 369574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 9e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 5215723 - 5215594
Alignment:
Q  41 cacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggc-tttcttctttttctttcacaaannnnnnnngttgttttgcacac 139  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||         ||||||||| ||||    
T  5215723 cacttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacac 5215624  T
Q  140 ttgtaacattgtggttcgtaatgtcaccaa 169  Q
    |||||||||||||||| |||||||||||||    
T  5215623 ttgtaacattgtggttggtaatgtcaccaa 5215594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 9178004 - 9177874
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttg 134  Q
    ||||||||||||| |||| ||||||||||||| ||||| |||||||||| ||| ||||| ||||||||||||||||||||||          ||||||||    
T  9178004 gggtagcacttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttg 9177905  T
Q  135 cacacttgtaacattgtggttcgtaatgtca 165  Q
    ||||||| ||||||||||||| ||| |||||    
T  9177904 cacacttataacattgtggttggtagtgtca 9177874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 29385453 - 29385313
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggt---------caaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnn 125  Q
    |||||||||||||||||| ||||||||||||||||||||         |||||||||||||| |||||||||||||||||||||||| | |             
T  29385453 gggtagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagattttttt 29385354  T
Q  126 gttgttttgcacacttgtaacattgtggttcgtaatgtcac 166  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  29385353 gttgttttgcacacttgtaacattgtggttggtaatatcac 29385313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  44 ttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 19417469 - 19417577
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggttcgta 159  Q
    |||||||||||||||||| ||||||||| ||||| |||||||  |||||||||||||         ||||||||||||||||| |||||||||||| |||    
T  19417469 ttggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggta 19417567  T
Q  160 atgtcaccaa 169  Q
    ||||||||||    
T  19417568 atgtcaccaa 19417577  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 1839999 - 1840051
Alignment:
Q  64 tgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  1839999 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 1840051  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 36568733 - 36568823
Alignment:
Q  65 gacattggtcaaccacaa-tgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggtt 155  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||        ||||||||| ||||||||||||||||||||    
T  36568733 gacattggtcaaccacaaatgtcacatgtggctttcttccttttctttcac-aatattttttgttgttttgtacacttgtaacattgtggtt 36568823  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 896274 - 896349
Alignment:
Q  41 cacttgggtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    |||||||||||  ||||||||||||| |||| ||||||||||||||| | | || |||||||||| ||||| ||||    
T  896274 cacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttctttctcttttacaa 896349  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 12605701 - 12605662
Alignment:
Q  48 gtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtca 12605662  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 22097542 - 22097490
Alignment:
Q  35 gggtagcacttgggtgacgttgtggttggtgacattggtcaaccacaatgtca 87  Q
    ||||||||||||  |||| |||| ||||||||||||||||||| |||||||||    
T  22097542 gggtagcacttgaatgacattgtagttggtgacattggtcaactacaatgtca 22097490  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 42772105 - 42772054
Alignment:
Q  54 ttgtggttggtgacattggtcaaccacaatgtcatatgtggctttcttcttt 105  Q
    ||||||||||||||||||  |||||||||||||| | ||| |||||||||||    
T  42772105 ttgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 7137665 - 7137722
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaa 117  Q
    ||||||||||||  |||||||||||||| | ||| |||||||| || |||||||||||    
T  7137665 ttggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaaa 7137722  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 43465112 - 43465204
Alignment:
Q  62 ggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaaannnnnnnngttgttttgcacacttgtaacattgtggt 154  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggt 43465204  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 33763466 - 33763505
Alignment:
Q  44 ttgggtgacgttgtggttggtgacattggtcaaccacaat 83  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 6894132 - 6894076
Alignment:
Q  60 ttggtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttcacaa 116  Q
    |||||||||||| ||||||||||||||||| |||| |||||||| | | ||||||||    
T  6894132 ttggtgacattgatcaaccacaatgtcataagtggttttcttctatctgtttcacaa 6894076  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 33763589 - 33763539
Alignment:
Q  63 gtgacattggtcaaccacaatgtcatatgtggctttcttctttttctttca 113  Q
    ||||||||||||||| ||||| ||| | ||| |||||||||||||||||||    
T  33763589 gtgacattggtcaactacaatatcacaagtgcctttcttctttttctttca 33763539  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 45051384 - 45051339
Alignment:
Q  48 gtgacgttgtggttggtgacattggtcaaccacaatgtcatatgtg 93  Q
    ||||| ||||||||||||||||||| | |||||||||||| |||||    
T  45051384 gtgacattgtggttggtgacattggccgaccacaatgtcacatgtg 45051339  T

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Target: scaffold1315 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 1818 - 1860
Alignment:
Q  41 cacttgggtgacgttgtggttggtgacattggtcaaccacaat 83  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  1818 cacttgggtgacattgtggttggtgacattgatcaaccacaat 1860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 1877 - 1811
Alignment:
Q  130 ttttgcacacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcaccaaagtattttccg 195  Q
    ||||| |||||||| | |||||||||  | |||||||||||||||||||||||| |||| |||||||    
T  1877 ttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagtgttttccg 1811  T

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Target: scaffold1293 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 253 - 211
Alignment:
Q  41 cacttgggtgacgttgtggttggtgacattggtcaaccacaat 83  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  253 cacttgggtgacattgtggttggtgacattgatcaaccacaat 211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 194 - 260
Alignment:
Q  130 ttttgcacacttgtaacattgtggttcgt-aatgtcaccaaccacaatgtcaccaaagtattttccg 195  Q
    ||||| |||||||| | |||||||||  | |||||||||||||||||||||||| |||| |||||||    
T  194 ttttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagtgttttccg 260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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