View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20618_low_51 (Length: 352)
Name: NF20618_low_51
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 571852 - 572189
Alignment:
| Q |
1 |
tacaatgactaaccagatcctatgtgttacaaatgcttttcagcccctaattgcaaaatgtaaacacaactacaacaaacaaactatcataattcagagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
571852 |
tacaatgactaaccagatcctatgtgttacaaatacttttctgcccctaattgcaaaatgtaaacacaactacaacaaacaaactatcataattcagagc |
571951 |
T |
|
| Q |
101 |
ttagagagatttgaaggtggctcaatgttatcaaacatgtcctctggaaaatcatcaaagaacctatcaattttgcaactccctgatggctcnnnnnnng |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
571952 |
ttagagaaatttgaaggtggctcaatgttatcaaacatgtcctctggaaaatcatcaaagaacctatcaattttgcaactctctgatggctcaaaaaaag |
572051 |
T |
|
| Q |
201 |
gaaccattccaaactcagatgtttccaagggaccaaacacatcaaataaattgtgttcatcaactctttccattggaaaagtaaaatcagtatcgagttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572052 |
gaaccattccaaactcagatgtttccaagggaccaaacacatcaaataaattgtgttcatcaactctttccattggaaaagtaaaatcagtatcgagttc |
572151 |
T |
|
| Q |
301 |
tggaatctgaggaaatccaatgtattcagtgcttttat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572152 |
tggaatctgaggaaatccaatgtattcagtgcttttat |
572189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University