View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_53 (Length: 345)
Name: NF20618_low_53
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 42301321 - 42301643
Alignment:
| Q |
8 |
attattcttaactcttgacattatgacagtgttacttattttcatgcatattgcatgtgttttaacactcttgtttccaaaaatgaatggaacttcaatt |
107 |
Q |
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| T |
42301321 |
attattcttaactcttcacattatgacggtgttacttattttcatgcatattgcatgtgttttaacactcttgtttccaaaaatgaatggaacttcaatt |
42301420 |
T |
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| Q |
108 |
gtgatgagtttgctatataacattgtcatcggtctgtcacacactaattctttgttttattgtaatggaccagatgttcttttccacttcaatatttgca |
207 |
Q |
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| T |
42301421 |
gtgatgagtttgctatataacattgtcatcggtctgtcacacactaattctttgttttattgtaatggaccagatgttcttttccacttcaatatttgca |
42301520 |
T |
|
| Q |
208 |
tgacgaccacctcatacaatgctatggtaataatttggttgagatttaagtgagtgcaaatattctttagctttcttgctatcttgtgtgtagacaattt |
307 |
Q |
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| T |
42301521 |
cgacgaccacctcatgcaatgctatggtaataatttggttgagatttaagtgagtgcaaatattctttagctttcttgctatcttgtgtgtagacaattt |
42301620 |
T |
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| Q |
308 |
tcactcgcatgcatgtgaagagt |
330 |
Q |
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| T |
42301621 |
tcactcgcatgcatgtgaagagt |
42301643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 32355951 - 32355857
Alignment:
| Q |
152 |
taattctttgttttattgtaatggaccagatgttcttttccacttcaatatttgcatgacgaccacctcatacaatgctatggtaataatttggttgag |
250 |
Q |
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| T |
32355951 |
taattccttgtgttatcataatggaccagatgttctttgccacttcatta-ttgcat---gcccacctcatgcaatgggatgatgataatttggttgag |
32355857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 17922091 - 17922040
Alignment:
| Q |
152 |
taattctttgttttattgtaatggaccagatgttcttttccacttcaatatt |
203 |
Q |
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|||||| || ||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
17922091 |
taattccttcttttattataatggatcagatgttcttttccacttcattatt |
17922040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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