View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_54 (Length: 339)
Name: NF20618_low_54
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 32272364 - 32272051
Alignment:
| Q |
7 |
tccaagaatataactttgtttgtgtatatttcagtaggaagaaattattaatattctgtaagtatttgagtagtatatttctgtttgttaggnnnnnnng |
106 |
Q |
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| T |
32272364 |
tccaataatataactttgtttgtgtatatttccgtaggaagaaattattaatattctgtaagtatttgagtagtatatttctgtttgttaggaaaaaa-g |
32272266 |
T |
|
| Q |
107 |
cttatcgtattgtactgccaaattcatctagtaagaatcctatctgtgtaaactattgaaaaatattgcttgattgaacttgaatttaaaatacttgaat |
206 |
Q |
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| T |
32272265 |
cttatcgtattgtactgccaaattcatctagtaagaatcctatctgtgtaaactattgaaaaatattgcttgattgaacttgaatttaaaatacttgaat |
32272166 |
T |
|
| Q |
207 |
ctaaatgctg-aatgatttgttcaatagttatgtacagggttgaaggaaccaatctcaaatgtttacgaattagccttagaatcagctgacaaaggaaac |
305 |
Q |
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| T |
32272165 |
ctaaatgctgaaatgatttgttcaatagttatgtacagggttgaaggaaccactctcaaatgtttacgaattagccttagaatcagctgactaaggaaac |
32272066 |
T |
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| Q |
306 |
tatatatatcaaatc |
320 |
Q |
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| T |
32272065 |
tatatatatcaaatc |
32272051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 32268140 - 32267975
Alignment:
| Q |
19 |
actttgtttgtgtatatttcagtaggaagaaattattaatattctgtaagtatttgagtagtatatttctgtttgttaggnnnnnnngcttatcgtattg |
118 |
Q |
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| T |
32268140 |
actttgtttgtgtatatttcagtaggaccaaatgattaatattcctta-----------agtatatttctgtttgtt-gggtcaaaggcttatcgtgttg |
32268053 |
T |
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| Q |
119 |
tactgccaaattcatctagtaagaatcctatctgtgtaaactattgaaaaatattgcttgattgaacttgaatttaaa |
196 |
Q |
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| T |
32268052 |
tactgccaaattcatgtagtacgaatcccatccgtgtaattttttgaaaaatgttgcttgattgaacttgaatttaaa |
32267975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 32268065 - 32267932
Alignment:
| Q |
106 |
gcttatcgtattgtactgccaaattcatctagtaagaatcctatctgtgtaaactattgaaaaatattgcttgattgaacttgaatttaaaatacttgaa |
205 |
Q |
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| T |
32268065 |
gcttatcgtgttgtactgccaaattcatgtagtacgaatcccatccgtgtaattttttgaaaaatgttgcttgattgaacttgaatttaaa--------- |
32267975 |
T |
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| Q |
206 |
tctaaatgctgaatgatttgttcaatagttatgtacagggttgaaggaa |
254 |
Q |
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| T |
32267974 |
--tacatg---aatgatttgttcaatatttatgtaca-ggttgaaggaa |
32267932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 48170170 - 48170092
Alignment:
| Q |
215 |
tgaatgatttgttcaatagttatgtacagggttgaaggaaccaatctcaaatgtttacgaattagccttagaatcagct |
293 |
Q |
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|||||||||||| |||||| |||||||| || |||||||| ||||| |||||||||| | ||||| ||||||||||||| |
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| T |
48170170 |
tgaatgatttgtacaatagctatgtacaaggctgaaggaatcaatcccaaatgtttagggattagtcttagaatcagct |
48170092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 48170293 - 48170210
Alignment:
| Q |
108 |
ttatcgtattgtactgccaaattcatctagtaagaatcctatctgtgtaaactattgaaaaatattgcttgattgaacttgaat |
191 |
Q |
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| T |
48170293 |
ttatcgtgctgtactgccacattcatccggtaagtatcctatctggttaaacttttgaaaaatattgcttgattgctcttgaat |
48170210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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