View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_56 (Length: 333)
Name: NF20618_low_56
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 52107503 - 52107805
Alignment:
| Q |
19 |
agaaaacttgagatgacaattgcagtaatagtaatataaaatggaaaaagagattaatcatagtcctttatttgataacatgacagttatactctagtta |
118 |
Q |
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| T |
52107503 |
agaaaacttgagatgacaattgcagtaatagtaatataaaatggaaa--gagattaatcatagtccttcatttgataacatgaaagttatactctagtta |
52107600 |
T |
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| Q |
119 |
tttcatcaagcnnnnnnnnnnnnnnnnntgcattgttctgctaaagagaaacagttcttctgtatagcatttcatcatcactctcctcttcctcatctga |
218 |
Q |
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| T |
52107601 |
tttcatcaagcaaaataaaaataaaaaatgcattgttctgctaaagagaaacagttcttctgtatagcatttcatcatcactctcctcttcctcatctga |
52107700 |
T |
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| Q |
219 |
aactatgtcattcccgggtagctctaatttcccaccaatacagaatgaaggacctatactttcggtttcgatataattgccctgcaatctctcttcaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52107701 |
aactatgtcattcccgggtagctctaatttcccaccaatacagaatgaaggacctatactttcggtttcgatataattgccctgcaatctctcttcaaat |
52107800 |
T |
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| Q |
319 |
ctctg |
323 |
Q |
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||||| |
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| T |
52107801 |
ctctg |
52107805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 149 - 323
Target Start/End: Original strand, 44518904 - 44519078
Alignment:
| Q |
149 |
cattgttctgctaaagagaaacagttcttctgtatagcatttcatcatcactctcctcttcctcatctgaaactatgtcattcccgggtagctctaattt |
248 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||| |
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| T |
44518904 |
cattgttgtgctaaagagaaacagttcttctgtatagcatttcatcatcactctcctcttcctcatttaaaacaatgtcattcccgggtagctttaattt |
44519003 |
T |
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| Q |
249 |
cccaccaatacagaatgaaggacctatactttcggtttcgatataattgccctgcaatctctcttcaaatctctg |
323 |
Q |
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| T |
44519004 |
cccaccaatacaaaacgaaggacatatactttcggttttgatataattgccctgcaatctctcttcgaatctctg |
44519078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 162 - 320
Target Start/End: Original strand, 44518194 - 44518352
Alignment:
| Q |
162 |
aagagaaacagttcttctgtatagcatttcatcatcactctcctcttcctcatctgaaactatgtcattcccgggtagctctaatttcccaccaatacag |
261 |
Q |
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| T |
44518194 |
aagagaaacagttcttctatatagcatttcatcatcactctcctcttcctcatctgaaactatgtcgttccctggtagctctagtttcccaccaatacgg |
44518293 |
T |
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| Q |
262 |
aatgaaggacctatactttcggtttcgatataattgccctgcaatctctcttcaaatct |
320 |
Q |
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| T |
44518294 |
aatgaaggacatgtactttccattttgatataattgccatgcaacctctcttcaaatct |
44518352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 44518791 - 44518878
Alignment:
| Q |
44 |
taatagtaatataaaatggaaaaagagattaatcatagtcctttatttgataacatgacagttatactc--tagttatttcatcaagc |
129 |
Q |
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||||| ||| |||||||||||| |||||| |||| | |||||| ||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
44518791 |
taataataacataaaatggaaatagagatgaatctttgtccttcatttgataacatgacagttatgctctatagttgtttcatcaagc |
44518878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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