View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_57 (Length: 329)
Name: NF20618_low_57
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 51962370 - 51962679
Alignment:
| Q |
1 |
cgtctaaatcctcgaatcgcactgccggtaaggatggaatatctggaaattccatctctttggctgtacatttactttcataagaaaagaaaaacatgag |
100 |
Q |
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| T |
51962370 |
cgtctaaatcctcgaatcgcactgccggtaaggatggaatatctggaaattccatctctttggctgtacatttactttcataagaaaagaaaaacatgag |
51962469 |
T |
|
| Q |
101 |
gatgaggccaaatatgtttgcaagtgacatcttgagttgcttcaatgggatgaaaacacatgtgtacaacacaattgtcactatccacaacctagattga |
200 |
Q |
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| T |
51962470 |
gatgaggccaaatatgtttgcaagtgacatcttgagttgcttcaatgggatgaaaacacatgtgtacaacacaattgtcactatccacaacctagattga |
51962569 |
T |
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| Q |
201 |
caaaccacaagacaattcatcctcaactagctaggagtaatatattaacttatatcttaaaattgcaatgcaatgcctgaattaaaagcctctctacact |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
51962570 |
caaaccacaagacaattcatcctcaa----ctaggagtaatatattaacttatatcttaaaat-----tacaatgcctgaattaaaagcctctctacact |
51962660 |
T |
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| Q |
301 |
ctagatctgtgtctctgtg |
319 |
Q |
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||||||||||||||||||| |
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| T |
51962661 |
ctagatctgtgtctctgtg |
51962679 |
T |
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