View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_58 (Length: 328)

Name: NF20618_low_58
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_58
NF20618_low_58
[»] chr3 (7 HSPs)
chr3 (165-299)||(17721521-17721655)
chr3 (165-299)||(19022750-19022884)
chr3 (71-150)||(17721644-17721726)
chr3 (71-150)||(19022873-19022955)
chr3 (286-328)||(17953703-17953745)
chr3 (145-253)||(19347058-19347167)
chr3 (17-57)||(32970963-32971003)
[»] chr4 (4 HSPs)
chr4 (9-61)||(55052951-55053003)
chr4 (11-62)||(14266111-14266161)
chr4 (11-57)||(3773637-3773683)
chr4 (16-44)||(4279516-4279544)
[»] chr5 (2 HSPs)
chr5 (11-61)||(4065052-4065102)
chr5 (12-49)||(3009198-3009235)
[»] chr8 (5 HSPs)
chr8 (9-61)||(16310376-16310428)
chr8 (10-61)||(37248336-37248387)
chr8 (11-57)||(15342098-15342143)
chr8 (11-57)||(15431163-15431208)
chr8 (11-57)||(15522467-15522512)
[»] chr1 (1 HSPs)
chr1 (9-61)||(34163050-34163102)
[»] chr6 (1 HSPs)
chr6 (17-61)||(23406584-23406628)
[»] chr2 (3 HSPs)
chr2 (11-54)||(29976462-29976505)
chr2 (11-57)||(17680711-17680757)
chr2 (11-57)||(39404852-39404897)
[»] chr7 (1 HSPs)
chr7 (11-61)||(5785727-5785776)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 17721655 - 17721521
Alignment:
Q  165 aaactgagtatcaattcagatgacaagtctgtttgaatgtaatttgtttatgataatatcattcaaataccgttttccggcaatgtaaatatataaataa 264  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |    
T  17721655 aaactgagtatcaattcagatgacaagtctgtttgaatgcaatttctttatcataatatcattcaaataccgttttctggcaatgtaaatatataaatga 17721556  T
Q  265 aacaatgtttagtatagttctgtaatttcccacat 299  Q
    |||||||||||| |||||||||| |||| ||||||    
T  17721555 aacaatgtttagaatagttctgtgatttaccacat 17721521  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 19022884 - 19022750
Alignment:
Q  165 aaactgagtatcaattcagatgacaagtctgtttgaatgtaatttgtttatgataatatcattcaaataccgttttccggcaatgtaaatatataaataa 264  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |    
T  19022884 aaactgagtatcaattcagatgacaagtctgtttgaatgcaatttctttatcataatatcattcaaataccgttttctggcaatgtaaatatataaatga 19022785  T
Q  265 aacaatgtttagtatagttctgtaatttcccacat 299  Q
    |||||||||||| |||||||||| |||| ||||||    
T  19022784 aacaatgtttagaatagttctgtgatttaccacat 19022750  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 17721726 - 17721644
Alignment:
Q  71 gatgacaaaattttcaattcat---cttctacgaattgtggctagttaaagtgtagaggtaacaaaacagaaaactgagtatc 150  Q
    ||||||||||||||||||||||   ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17721726 gatgacaaaattttcaattcattaacttctacgaatcgtggctagtcaaagtgtagagataacaaaacagaaaactgagtatc 17721644  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 19022955 - 19022873
Alignment:
Q  71 gatgacaaaattttcaattcat---cttctacgaattgtggctagttaaagtgtagaggtaacaaaacagaaaactgagtatc 150  Q
    ||||||||||||||||||||||   ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19022955 gatgacaaaattttcaattcattaacttctacgaatcgtggctagtcaaagtgtagagataacaaaacagaaaactgagtatc 19022873  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 17953703 - 17953745
Alignment:
Q  286 gtaatttcccacataacgattgttggtcctgatagaaaagaac 328  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17953703 gtaatttcccacataacgattgttggtcctgatagaaaagaac 17953745  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 19347058 - 19347167
Alignment:
Q  145 agtatctcagtaaaattcataaactgagtatcaattcagatgacaagtctgtttgaatgtaatttgtttatgataatatcattcaa-ataccgttttccg 243  Q
    ||||||| ||| ||||| || |||||||||||||||||||||| |||| ||||| |||| |||| |||||  || | |||||||||  || |||||||||    
T  19347058 agtatctaagtcaaatttatcaactgagtatcaattcagatgagaagtttgttttaatgcaattggtttaacatgagatcattcaatgtatcgttttccg 19347157  T
Q  244 gcaatgtaaa 253  Q
     |||||||||    
T  19347158 acaatgtaaa 19347167  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 32970963 - 32971003
Alignment:
Q  17 tccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    ||||||||||||| |||||||| ||||| ||||||||||||    
T  32970963 tccaataactaaattttaagataaaaaaattaaacaaatga 32971003  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 55053003 - 55052951
Alignment:
Q  9 agatgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55053003 agatgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 55052951  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 14266111 - 14266161
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatct 62  Q
    |||| |||||||||| |||||||||||||||||| ||||| |||||||||||    
T  14266111 atgacatccaataacaaaaatttaagatgaaaaa-ttaaaaaaatgatatct 14266161  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 3773683 - 3773637
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    |||||||| ||||||||||||||||| | ||||| ||||||||||||    
T  3773683 atgaaatcaaataactaaaatttaagtttaaaaaattaaacaaatga 3773637  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 4279516 - 4279544
Alignment:
Q  16 atccaataactaaaatttaagatgaaaaa 44  Q
    |||||||||||||||||||||||||||||    
T  4279516 atccaataactaaaatttaagatgaaaaa 4279544  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 4065102 - 4065052
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4065102 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 4065052  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 3009198 - 3009235
Alignment:
Q  12 tgaaatccaataactaaaatttaagatgaaaaatttaa 49  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  3009198 tgaaatccaataactaaaatataagataaaaaatttaa 3009235  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 16310376 - 16310428
Alignment:
Q  9 agatgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16310376 agatgaaatccaataactaaaatttacgatgaaaaatttaaacaaatgatatc 16310428  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 37248336 - 37248387
Alignment:
Q  10 gatgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37248336 gatgaaatccaataactaaaatttacgatgaaaaatttaaacaaatgatatc 37248387  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 15342098 - 15342143
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  15342098 atgacatccaataactaaaatttaagat-aaaaaattaaacaaatga 15342143  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 15431163 - 15431208
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  15431163 atgacatccaataactaaaatttaagat-aaaaaattaaacaaatga 15431208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 15522467 - 15522512
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  15522467 atgacatccaataactaaaatttaagat-aaaaaattaaacaaatga 15522512  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 34163102 - 34163050
Alignment:
Q  9 agatgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34163102 agatgaaatccaataactaaaatttaagatgagaaatttaaacaaatgatatc 34163050  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 23406584 - 23406628
Alignment:
Q  17 tccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23406584 tccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 23406628  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 29976462 - 29976505
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaa 54  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  29976462 atgacatccaataactaaaatttaagatgaaaaaattaaacaaa 29976505  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 17680711 - 17680757
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    |||| ||||||| ||||||||||||||| ||||| ||||||||||||    
T  17680711 atgacatccaattactaaaatttaagataaaaaaattaaacaaatga 17680757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 39404852 - 39404897
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatga 57  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  39404852 atgacatccaataactaaaatttaagat-aaaaaattaaacaaatga 39404897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 5785727 - 5785776
Alignment:
Q  11 atgaaatccaataactaaaatttaagatgaaaaatttaaacaaatgatatc 61  Q
    |||| |||||||||||||| |||||||| ||||| ||||||||||||||||    
T  5785727 atgacatccaataactaaattttaagat-aaaaaattaaacaaatgatatc 5785776  T

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