View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_60 (Length: 323)
Name: NF20618_low_60
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 31525121 - 31524835
Alignment:
| Q |
19 |
acaacgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcacagaaccccacccacagtgtga |
118 |
Q |
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| T |
31525121 |
acaacgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcactgaaccccacccacagtgtga |
31525022 |
T |
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| Q |
119 |
aacaaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattctctctacaaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31525021 |
aacaaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattctctctacaaac |
31524922 |
T |
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| Q |
219 |
ctctcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccactggatccagtggtgaaaaaagctgcgtcc |
305 |
Q |
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| T |
31524921 |
ccctcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccaccggatccagtggtgaaaaaagctgcgtcc |
31524835 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 38003492 - 38003429
Alignment:
| Q |
76 |
cgttggttaaactctcaagcacagaaccccacccacagtgtgaaacaaaaccaccaatggaagg |
139 |
Q |
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|||| |||| ||||||||||||| ||||||||||||| || ||| |||||||||||| ||||| |
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| T |
38003492 |
cgttcgttatactctcaagcacataaccccacccacattgcgaatgaaaaccaccaatagaagg |
38003429 |
T |
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