View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_61 (Length: 323)
Name: NF20618_low_61
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 41288905 - 41288602
Alignment:
| Q |
1 |
aagtattaagatgagggccagttggaatgcaaaaagcagacaaagaaacttaagaatttgtcactagcaaactggagtttagctagctttacagattcac |
100 |
Q |
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| T |
41288905 |
aagtattaagatgagagccagttggaatgcaaaaagcagacaaagaaacttaagaatttgtcactagcaaactggagtttagctagctttacagattcac |
41288806 |
T |
|
| Q |
101 |
atggttttagcttatgaaaccctaaatattttaaaatggttttctataatgtacggtttagtacactactacttggttgtgttgtgctgttactttggac |
200 |
Q |
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| T |
41288805 |
atggttttagcttatgaaaccctaaatatttttaaatggttttctataatgtacggtttagtacactactacttggttgtgttgtgctgttactttggac |
41288706 |
T |
|
| Q |
201 |
ttgtttatgggcacttaagataattaggtagacatgtaaaaagctaaggttagaaccaataatatccagctgggttggtattgaccttgtttatacctaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41288705 |
ttgtttatgggcacttaagataattaggtagacatgtaaaaagctaaggttagaaccaacaatatccagctgggttggtattgaccttgtttatacctaa |
41288606 |
T |
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| Q |
301 |
aagg |
304 |
Q |
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|||| |
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| T |
41288605 |
aagg |
41288602 |
T |
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