View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20618_low_63 (Length: 321)
Name: NF20618_low_63
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_63 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 6129359 - 6129663
Alignment:
| Q |
1 |
gttggtgaatttcgacagagatatttgaaaaattcaaaaataatgaagaaaacttcaatgaaaagctttccaaagatgtacaaggaatgtggagcttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129359 |
gttggtgaatttcgacagagatatttgaaaaattcaaaaataatgaagaaaacttcaatgaaaagctttccaaagatgtacaaggaatgtggagcttgta |
6129458 |
T |
|
| Q |
101 |
tgaagctacacaattaagggttcataatgaagatatattagatgaagcacttgatttcacatactctcacctcaattcctacatcaacactcaattgagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129459 |
tgaagctacacaattaagggttcataatgaagatatactagatgaagcacttgatttcacatactctcacctcaattcctacatcaacactcaattgagt |
6129558 |
T |
|
| Q |
201 |
ccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctaggttggaaacatggtatcacatttcttcatacaatgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129559 |
ccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctaggttggaaacatggtatcacatttcttcatacaatgaag |
6129658 |
T |
|
| Q |
301 |
aacct |
305 |
Q |
| |
|
||||| |
|
|
| T |
6129659 |
aacct |
6129663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 34450884 - 34450623
Alignment:
| Q |
4 |
ggtgaatttcgacagagatatttgaaaaattcaaaaataatgaagaaaacttcaatgaaaagctttccaaagatgtacaaggaatgtggagcttgtatga |
103 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| ||| ||| || ||| |||||||| |||||||||||||||||||||||||||| ||||| || |
|
|
| T |
34450884 |
ggtgaatgttgacagagatatttgaaaaattcaaaaacaataaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacga |
34450785 |
T |
|
| Q |
104 |
agctacacaattaagggttcataatgaagatatattagatgaagcacttgatttcacatactctcacctcaattcctacatcaacactcaattgagtcct |
203 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || | ||||||||||| |
|
|
| T |
34450784 |
ggctgcacaattaaggattcatgatgaagatatattagatgaagcacttgatttcacatactctcaccttaattcccttatcaccaatgaattgagtcct |
34450685 |
T |
|
| Q |
204 |
tttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctaggtt |
265 |
Q |
| |
|
||||| || |||| || | | ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
34450684 |
tttcttgctaaacaactatgccaatgcttaaggacacctcttcacaagggagttcctaggtt |
34450623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 34487345 - 34487048
Alignment:
| Q |
8 |
aatttcgacagagatatttgaaaaattcaaaaataatgaagaaaacttcaatgaaaagctttccaaagatgtacaaggaatgtggagcttgtatgaagct |
107 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| || ||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
34487345 |
aattttgacagatatatttgaaaaattcaaaaacaacaaaggaaacttcaatgaaaagctttttcaagatgtacaagaaatgtggagcttgtatgaagcc |
34487246 |
T |
|
| Q |
108 |
acacaattaagggttcataatgaagatatattagatgaagcacttgatttcacatactctcacctcaattcctacatcaacactcaattgagtccttttc |
207 |
Q |
| |
|
||||||||| | | || |||||||||| || ||||||||||||||||||||| ||||||||| ||||||| |||| || | ||||||||||||||| |
|
|
| T |
34487245 |
gcacaattaaagataaatggtgaagatatactaaatgaagcacttgatttcacattctctcacctaaattccttgatcaccaataaattgagtccttttc |
34487146 |
T |
|
| Q |
208 |
tatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctaggttggaaacatggtatcacatttcttcatacaatgaagaacct |
305 |
Q |
| |
|
| | | ||||||| | |||||||| |||||| |||||||||| || ||||||||||| ||| ||| |||||||||| || | |||||||||| |
|
|
| T |
34487145 |
ttgagaaaaaaatacgccattgcttaaagacacctcttcacaagggggtccctaggttggagacaaggtgctacatttcttcctatagtgaagaacct |
34487048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 34461631 - 34461374
Alignment:
| Q |
6 |
tgaatttcgacagagatatttgaaaaattcaaaaataatgaagaaaacttcaatgaaaagctttccaaagatgtacaaggaatgtggagcttgtatgaag |
105 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
34461631 |
tgaattttgacagatatatttgaaaaattcaaaaaccctaaaggaaacttcaatgaaaagatttccaaagatatacaaggaatgtggaggttgtacgaag |
34461532 |
T |
|
| Q |
106 |
ctacacaattaagggttcataatgaagatatattagatgaagcacttgatttcacatactctcacctcaattcctacatcaacactcaattgagtccttt |
205 |
Q |
| |
|
| |||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||| | || ||| ||| | || |||| |||||||||| |
|
|
| T |
34461531 |
ccgcacatttaatgattcatggtgaagatatattagatgaagcacttgatttcacatactctaaactaaataccttggaaaccaatcaagtgagtccttt |
34461432 |
T |
|
| Q |
206 |
tctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctagg |
263 |
Q |
| |
|
||| ||||||| |||||| ||||||||| |||||| || ||||| ||||||||||| |
|
|
| T |
34461431 |
tcttgctacacaagtacgtcactgcttaaagacacctctttacaagagagttcctagg |
34461374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 34475364 - 34475238
Alignment:
| Q |
53 |
cttcaatgaaaagctttccaaagatgtacaaggaatgtggagcttgtatgaagctacacaattaagggttcataatgaagatatattagatgaagcactt |
152 |
Q |
| |
|
|||| |||||||| ||||| ||||||| |||||||||||||||||||||||| | |||| |||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
34475364 |
cttcgatgaaaaggtttccgaagatgttcaaggaatgtggagcttgtatgaaacagcacatttaaagattcatggagaagatatattagatgaagcactt |
34475265 |
T |
|
| Q |
153 |
gatttcacatactctcacctcaattcc |
179 |
Q |
| |
|
||||||||||| ||||||| |||||| |
|
|
| T |
34475264 |
gatttcacatatgctcaccttaattcc |
34475238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 1594951 - 1594812
Alignment:
| Q |
72 |
aaagatgtacaaggaatgtggagcttgtatgaagctacacaattaagggttcataatgaagatatattagatgaagcacttgatttcacatactctcacc |
171 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | || |||| | ||||| |||||||||||||||||||| |||| ||||||| | |||||| |
|
|
| T |
1594951 |
aaagatgttcaaggaatgtggagcttgtatgaagcagcgcatttaaagattcatggagaagatatattagatgaagcgcttgttttcacacatgctcacc |
1594852 |
T |
|
| Q |
172 |
tcaattcctacatcaacact---caattgagtccttttct |
208 |
Q |
| |
|
| |||||| | || || ||| ||||||||||||||||| |
|
|
| T |
1594851 |
ttaattccaaaattaatactaaccaattgagtccttttct |
1594812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University