View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_66 (Length: 315)
Name: NF20618_low_66
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 27526452 - 27526172
Alignment:
| Q |
19 |
caacaaattgagtgcatggtttttacctttcccatgaatcatttatgtcattagtagttctccaactatttcccactttagcaccccataaagctggata |
118 |
Q |
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| T |
27526452 |
caacaaattgagtgcatggtttttacctttcccatgaatcatttatgtcattagtagttctccaactatttcccactttagcaccccataaagctggata |
27526353 |
T |
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| Q |
119 |
catttgtcccctaacaaacaaataaagtttcattagagaggagtacctaacattggaagagcattgagatgctaaaattatgcaagaattaccattcaca |
218 |
Q |
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| T |
27526352 |
catttgtcccctaacaaacaaataaagtttcattagagaggagtacctagcattggaagagcaataagatgctaaaattatgcaagaattaccattcaca |
27526253 |
T |
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| Q |
219 |
tagcgaaaagaagattggacgacctgctttcgctaaagcccgagtcataacaggatacctatatataagaatgtcatggtt |
299 |
Q |
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| T |
27526252 |
tagcgaaaagaagattggacgacctgctttcgctaaagcccgagtcataacaggatacctatatataagaatgtcatggtt |
27526172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 27532100 - 27531951
Alignment:
| Q |
24 |
aattgagtgcatggtttttacctttcccatgaatcatttatgtcattagtagttctccaactatttcccactttagcaccccataaagctggatacattt |
123 |
Q |
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| T |
27532100 |
aattgagtgcatggtttttacctttcccatgtatcagttatgtcaccagtagttctccaactatttcccactttagcaccccatttagctggatgcatat |
27532001 |
T |
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| Q |
124 |
gtcccctaacaaacaaataaagtttcattagagaggagtacctaacattg |
173 |
Q |
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| T |
27532000 |
ctcccctaacaaacaaagaaagtttgattagagaggaatacttaaaattg |
27531951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 27531756 - 27531672
Alignment:
| Q |
205 |
aattaccattcacatagcgaaaagaagattggacgacctgctttcgctaaagcccgagtcataacaggatacctatatataagaa |
289 |
Q |
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| T |
27531756 |
aattaccattcacatagcgaaaagaagattggacgacctgccttcattaaagcgcgagtcataacaggatacctatacataagaa |
27531672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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