View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_68 (Length: 313)
Name: NF20618_low_68
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 42696820 - 42696534
Alignment:
| Q |
13 |
aatattgttaatttt-gttataggtatatgattagattgagcttgtgtcagcatctcgtaggatgtgactttaaggtttgacgggatgaccgtggggttg |
111 |
Q |
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| T |
42696820 |
aatattgttaatttttgttgtaggtatataattagattgagcttgtgtcagcatctcgtaggatgtgactttaaggtttgacgggatgaccgtgggattg |
42696721 |
T |
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| Q |
112 |
agtgttctggctggaaaaccaaacatatgtctttgttttgtgctgtaaaagaagttcttaaaaagaacaaacgttaaccgtcaaggtatagctctattga |
211 |
Q |
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| T |
42696720 |
agtgttctggctggaaaaccaaacatatgtctttgttttgtgctgtaaaagaagttcttaaaaagaacaaacgttaaccgtcaaggtatagctctattga |
42696621 |
T |
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| Q |
212 |
aaagggttgcaataagaaaac-aattattagaatacaggtagctttggtaaattattgcatgnnnnnnnatgtgcgtatgcatgtat |
297 |
Q |
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| T |
42696620 |
aaagggttgcaataagaaaactaattattagaatacaggtagctttggtaaattattgcatgtttttttatgtgcgtatgcatgtat |
42696534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 142 - 297
Target Start/End: Original strand, 41987623 - 41987778
Alignment:
| Q |
142 |
ctttgttttgtgctgtaaaagaagttcttaaaaagaacaaacgttaaccgtcaaggtatagctctattgaaaagggttgcaataagaaaacaattattag |
241 |
Q |
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|||| |||||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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| T |
41987623 |
ctttattttgtgctgcaatagaagttttttaaaagaacaaacattaaccgtcaaggtatagctcaattgaaaagggttgtaataagaaaacaattatttg |
41987722 |
T |
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| Q |
242 |
aatacaggtagctttggtaaattattgcatgnnnnnnnatgtgcgtatgcatgtat |
297 |
Q |
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| T |
41987723 |
gatacagatagctttggtaaattattgcatgttttttaatgtgcgtatgcatgtat |
41987778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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