View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_69 (Length: 301)
Name: NF20618_low_69
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_69 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: scaffold0257 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 20649 - 20380
Alignment:
| Q |
23 |
gggaattcaaatctctaatttgcaacaaattgatcagatggtattatgctataaaggacaagggcgagcacattctaattttggtatatgaaaatccaaa |
122 |
Q |
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| T |
20649 |
gggaattcaaatctctaatttgcaacaaattgatcagatggtattatgctataaaggacaagggcgagcacattctaattttggtatatgaaaatccaaa |
20550 |
T |
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| Q |
123 |
ccagattatgacaatgatgctgttctagatggtaattgatcgaagatttatatatttannnnnnngcgaagatattagtacacttcaaagcaaacaaaat |
222 |
Q |
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| T |
20549 |
ccagattatgacaatgatgctgttctagatggtaattgatcgaagatttatatatttatttttttgcgaagatattagtacacttcaaagcaaacaaaat |
20450 |
T |
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| Q |
223 |
gtaagccttgctttggctagatttcaattgcacgattctggttgagacataattgtaggtctgatgatgt |
292 |
Q |
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| T |
20449 |
gtaagccttgctttggctagatttcaattgcatgattctggttgagacataattgtaggtctgatgatgt |
20380 |
T |
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 21462357 - 21462439
Alignment:
| Q |
67 |
tatgctataaaggacaagggcgagcacattctaattttggtatatgaaaatccaaaccagattatgacaatgatgctgttcta |
149 |
Q |
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| T |
21462357 |
tatgctgtaaaggacaagggcgagcacattatgatgttcgtatatgaaaatccaaactggattatgacaatgatggtgttcta |
21462439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 21462487 - 21462584
Alignment:
| Q |
191 |
aagatattagtacacttcaaagcaaacaaaatgtaagccttgctttggctagatttcaattgcacgattctggttgagacataattgtaggtctgatg |
288 |
Q |
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| T |
21462487 |
aagatattagtacaattcaatgcaatcaaaatgaaggtcttgctttggcttgattgcaattacatgagtctggatgatatataaatgtttgtctgatg |
21462584 |
T |
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