View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_72 (Length: 288)
Name: NF20618_low_72
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_72 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 4021809 - 4021555
Alignment:
| Q |
23 |
taacttaatttgtaaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccgactacacggt |
122 |
Q |
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| T |
4021809 |
taacttaatttgtaaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccgactacacggt |
4021710 |
T |
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| Q |
123 |
atctggacggagcaattttcctgaaactggactgtacctatactttattaacccgaaccaaatagtaccattttccgcaatgcacctccataaccatttt |
222 |
Q |
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| T |
4021709 |
atctggatggagcaattttcctgaaactggactgtacctatactttattaacctgaaccaaatagtaccattttccgcaatgcacctccataaccatttt |
4021610 |
T |
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| Q |
223 |
cttcgtaacgttaaatgaaataagtacaagttttttacttcgagtcctccttctt |
277 |
Q |
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| T |
4021609 |
cttcgtaactttaaatgaaataagtacaagttttttacttcgagtcctccttctt |
4021555 |
T |
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Target: scaffold0376 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
| Q |
36 |
aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga |
113 |
Q |
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| T |
5190 |
aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga |
5113 |
T |
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