View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_74 (Length: 280)
Name: NF20618_low_74
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 29729497 - 29729238
Alignment:
| Q |
1 |
acacctgtctgaaaaaacaattc-ttattgttacgaagtattccagttataaattccaaagtttaaggtacaaaaatgaaattgatttgctaaatagaca |
99 |
Q |
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||||||||||||||||||||||| |||||||||| |||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29729497 |
acacctgtctgaaaaaacaattccttattgttacaaagttttccagttacaaattccgaagtttaagctacaaaaatgaaattgatttgctaaatagaca |
29729398 |
T |
|
| Q |
100 |
tattaattagtaattcaaaaactaaattcatagannnnnnnnncatgattaaccatgaacaacaaagaaata---tgaagattaacaatttcaaactaca |
196 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29729397 |
tattaattagtaattcaaaaactaaattcacaga--tttttttcatgattaatcatgaacaacaaagaaatatgttgaagattaacaatttcaaactaca |
29729300 |
T |
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| Q |
197 |
gggaactttttatgaaagtagagactcaatgttgttgttcttcttactagcattttctctta |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729299 |
gggaactttttatgaaagtagagactcaatgttgttgttcttcttactagcattttctctta |
29729238 |
T |
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