View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_77 (Length: 275)
Name: NF20618_low_77
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 38864487 - 38864652
Alignment:
| Q |
62 |
attactcatatatattactatatattctttaaactaaaaaacaaaggcagtaccataattataaggctcaaaattcaaaaagttaaacagagttatttaa |
161 |
Q |
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| T |
38864487 |
attactcatatatgttactgtatattctttaaactaaaaaacaaaggcagtaccataattataaggctcaaaattcaaaaagttaaacagagttatttaa |
38864586 |
T |
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| Q |
162 |
ttgaacagtagttttctggtttaagacaacacgacgcttgtgtaggtataaaaggtttcagagctg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864587 |
ttgaacagtagttttctggtttaagacaacacgacgcttgtgtaggtataaaaggtttcagagctg |
38864652 |
T |
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