View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_80 (Length: 271)

Name: NF20618_low_80
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_80
NF20618_low_80
[»] chr4 (3 HSPs)
chr4 (15-102)||(56228876-56228963)
chr4 (159-255)||(51268324-51268421)
chr4 (162-211)||(51268472-51268521)
[»] chr8 (4 HSPs)
chr8 (157-255)||(29739907-29740005)
chr8 (159-255)||(10756450-10756546)
chr8 (159-211)||(10756597-10756649)
chr8 (159-211)||(29740056-29740108)
[»] chr6 (8 HSPs)
chr6 (158-255)||(17193843-17193940)
chr6 (158-255)||(25054438-25054535)
chr6 (158-255)||(30780268-30780365)
chr6 (159-255)||(3962538-3962634)
chr6 (159-213)||(17193740-17193794)
chr6 (157-211)||(25054586-25054640)
chr6 (159-211)||(3962685-3962737)
chr6 (159-211)||(30780416-30780468)
[»] chr5 (6 HSPs)
chr5 (154-255)||(11772736-11772837)
chr5 (159-255)||(17534648-17534744)
chr5 (158-211)||(8881021-8881074)
chr5 (154-211)||(11772888-11772945)
chr5 (159-211)||(17534545-17534597)
chr5 (157-195)||(8881101-8881139)
[»] chr3 (5 HSPs)
chr3 (158-255)||(34630588-34630684)
chr3 (159-238)||(46906240-46906319)
chr3 (160-211)||(34630735-34630786)
chr3 (159-209)||(22899519-22899569)
chr3 (159-211)||(46905406-46905458)
[»] chr7 (1 HSPs)
chr7 (159-237)||(43406290-43406368)
[»] chr2 (1 HSPs)
chr2 (157-209)||(18900622-18900674)
[»] chr1 (1 HSPs)
chr1 (160-209)||(45970002-45970051)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 56228963 - 56228876
Alignment:
Q  15 atttttcactgcgaaaattgtctcaaaatgggaaaatacaaagtttacggtagttccaaacaagctattaatcatcttaaaaatatat 102  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56228963 atttttcactgcaaaaattgtctcaaaatgggaaaatacaaagtttacggtagttccaaacaagctattaatcatcttaaaaatatat 56228876  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 51268324 - 51268421
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcacccc-aatttttaatacatttcaatttcat 255  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51268324 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaaatttttaatacatttcaatttcat 51268421  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 51268521 - 51268472
Alignment:
Q  162 aaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    ||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  51268521 aaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 51268472  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 29739907 - 29740005
Alignment:
Q  157 tagagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    |||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739907 tagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 29740005  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 10756450 - 10756546
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756450 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 10756546  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 10756649 - 10756597
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  10756649 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 10756597  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 29740108 - 29740056
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  29740108 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 29740056  T

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Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 17193940 - 17193843
Alignment:
Q  158 agagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193940 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 17193843  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 25054438 - 25054535
Alignment:
Q  158 agagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054438 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 25054535  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 30780268 - 30780365
Alignment:
Q  158 agagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780268 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 30780365  T

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Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 3962538 - 3962634
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962538 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 3962634  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 17193740 - 17193794
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataata 213  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||    
T  17193740 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataata 17193794  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 25054640 - 25054586
Alignment:
Q  157 tagagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  25054640 tagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 25054586  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 3962737 - 3962685
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  3962737 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 3962685  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 30780468 - 30780416
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  30780468 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 30780416  T

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Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 11772736 - 11772837
Alignment:
Q  154 gcctagagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttc 253  Q
    |||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772736 gccttgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttc 11772835  T
Q  254 at 255  Q
    ||    
T  11772836 at 11772837  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 17534744 - 17534648
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534744 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 17534648  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 8881021 - 8881074
Alignment:
Q  158 agagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  8881021 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 8881074  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 11772945 - 11772888
Alignment:
Q  154 gcctagagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  11772945 gccttgagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 11772888  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 17534545 - 17534597
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  17534545 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17534597  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 8881139 - 8881101
Alignment:
Q  157 tagagaaatgctaaagacaaaccctcaaacacactcttt 195  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  8881139 tagagaaatgctaaggacaaactctcaaacacactcttt 8881101  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 34630588 - 34630684
Alignment:
Q  158 agagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 255  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34630588 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctca-cccaatttttaatacatttcaatttcat 34630684  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 46906319 - 46906240
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaattttta 238  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  46906319 gagaaatgctaaggacaaaccctcaaacacactctttttacacactccaataataggaagccacctcacccaatttttta 46906240  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 34630786 - 34630735
Alignment:
Q  160 agaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    ||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  34630786 agaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 34630735  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 22899569 - 22899519
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaat 209  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||    
T  22899569 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaat 22899519  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 46905406 - 46905458
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataa 211  Q
    |||||||||||| || |||| ||||||||||| ||||  ||||||||||||||    
T  46905406 gagaaatgctaaggataaactctcaaacacacactttcaacacactccaataa 46905458  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 43406368 - 43406290
Alignment:
Q  159 gagaaatgctaaagacaaaccctcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 237  Q
    |||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  43406368 gagaaatgctaaggataaaccctcaaacacactcttttgacacactccaataataggaagccacctcacctcaattttt 43406290  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 18900622 - 18900674
Alignment:
Q  157 tagagaaatgctaaagacaaaccctcaaacacactctttttacacactccaat 209  Q
    |||||||||||||| |||| || ||||||||||||||||| |||| |||||||    
T  18900622 tagagaaatgctaaggacacactctcaaacacactcttttaacactctccaat 18900674  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 45970002 - 45970051
Alignment:
Q  160 agaaatgctaaagacaaaccctcaaacacactctttttacacactccaat 209  Q
    ||||||||||| |||| || ||||||||||||||||| |||| |||||||    
T  45970002 agaaatgctaaggacacactctcaaacacactcttttaacactctccaat 45970051  T

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