View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20618_low_81 (Length: 265)
Name: NF20618_low_81
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_81 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 36439436 - 36439184
Alignment:
| Q |
1 |
atttgaaaactaataaatatcatattagaattttaagtgtgagtgtctccgtgaacttaattcaattgatatgaattaatatggataattcattatttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36439436 |
atttgaaaactaataaatatcatattagaattttaagtgtgagtgtctccgtgaacttaattcaattgatatagattaatatggataattcattatttat |
36439337 |
T |
|
| Q |
101 |
ataggatcagagttcgaacttcaaacatcttacttaatcaccttaagaaaagatgaatatttaagtttgaatgataaccttaggcgaactatatttgtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||| |
|
|
| T |
36439336 |
ataggatcagagttcgaacttcaaacaccttacttaatcaccttaagaaaagatgaatatttaagtgtgaatgataaccttacgcggactataattgtgt |
36439237 |
T |
|
| Q |
201 |
taaataaaagatataaaataagtgaatcatatacttcatctcctacaaatttt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36439236 |
taaataaaagatataaaataagtgaatcatatacttcatctcctacaaatttt |
36439184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University