View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_82 (Length: 264)
Name: NF20618_low_82
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_82 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 4587814 - 4587591
Alignment:
| Q |
17 |
tgactacatttatttccaccctagcaaagaatgatattgtttgataaaattaatataataattttgaagatagttataagttagttatgattattgctta |
116 |
Q |
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| T |
4587814 |
tgaccacatttatttccaccctagcaaataatgatattgtttgataaa-ttaatataatatttttaaagatatttataagttagttatgattattgcttg |
4587716 |
T |
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| Q |
117 |
tnnnnnnnnnnnnnngttgtgattagatggaatttggttatattagtaatcttaggatcacaatataaagtgtttctcaacttttttattctatcatttc |
216 |
Q |
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| T |
4587715 |
taaaaaaaaa------ttgtgattagatggaatttggttatattagtaatcttaggatcacaatataaagtgtttctcaacttttttattctatcaattc |
4587622 |
T |
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| Q |
217 |
caaaataaatctcaaacgacatctaactaac |
247 |
Q |
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| T |
4587621 |
caaaataaatctcgaacgacatctaactaac |
4587591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 4573156 - 4572994
Alignment:
| Q |
83 |
aagatagttataagttagttatgattattgcttatnnnnnnnnnnnnnngttgtgattagatggaat-ttggttatattagtaatcttaggatcacaata |
181 |
Q |
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| T |
4573156 |
aagatagttataagttagttatgattattgcttataaaaaaaagtta--gttatgattagatgcaaggttggttatattagtgatcttaggatcacaata |
4573059 |
T |
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| Q |
182 |
taaagtgtttctcaacttttttattctatcatttccaaaataaatctcaaacgacatctaactaa |
246 |
Q |
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| T |
4573058 |
tacagtgtttctcaactttattattctatcaattccaaaataaatcccaaacgatgtctaactaa |
4572994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 4566117 - 4566017
Alignment:
| Q |
147 |
aatttggttatattagtaatcttaggatcacaatataaagtgtttctcaacttttttattctatcatttccaaaataaatctcaaacgacatctaactaa |
246 |
Q |
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||||||||||||||||| || |||||||||||||||||||| ||||||||||||| |||| ||||| |||| |||||||||||||||||||||||| ||| |
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| T |
4566117 |
aatttggttatattagtgattttaggatcacaatataaagtttttctcaacttttctattttatcaattcccaaataaatctcaaacgacatctaagtaa |
4566018 |
T |
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| Q |
247 |
c |
247 |
Q |
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| T |
4566017 |
c |
4566017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 4559276 - 4559223
Alignment:
| Q |
56 |
tttgataaaattaatataataattttgaagatagttataagttagttatgatta |
109 |
Q |
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| T |
4559276 |
tttgttaaaattagtttgatatttttcaagatagttataagttagttatgatta |
4559223 |
T |
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