View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_83 (Length: 263)
Name: NF20618_low_83
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_83 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 49861344 - 49861587
Alignment:
| Q |
12 |
atgaacctctgttcccaaaacctagtaaaaaggattaagaaactgatgaaagtacagtaacaacagaagcttcagcttcacaaataaataaataaaccga |
111 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
49861344 |
atgatcctctgttcccaaaaccttgtaaaaaggattaagaaactgatgaaagtacagtaaca---gtagcttcagcttcacaaataaataaataaaccga |
49861440 |
T |
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| Q |
112 |
aacctactcactccaaccaaccaaaccaaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49861441 |
aacctactcactccaaccaacc-----aaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
49861535 |
T |
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| Q |
212 |
cagatgaattcgaacatggataatgaaagagaaatcgaaaacaattatgccc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49861536 |
cagatgaattcgaacatggataatgaaagagaaatcgaaaacaattatgccc |
49861587 |
T |
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