View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_87 (Length: 241)
Name: NF20618_low_87
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 4239434 - 4239354
Alignment:
| Q |
18 |
tgaaggggttctcacattcagattggggagcattccaagacactagaagatccaccattggcttctgtttcttccatggta |
98 |
Q |
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| T |
4239434 |
tgaaggggttctcacattcagattggggagcatgccaagacactagaagatccaccattggcttctgtttcttccatggta |
4239354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 4239358 - 4239306
Alignment:
| Q |
136 |
tggtatcaagatcttcatcaaaagctgaatacaaaagcacttgtacaagctac |
188 |
Q |
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| T |
4239358 |
tggtatcaagatcttcatcaaaagctgaatagaaaagcacttgtacaagctac |
4239306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 4239290 - 4239258
Alignment:
| Q |
184 |
gctactctacctattgcaagattttctcataac |
216 |
Q |
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| T |
4239290 |
gctactctacctattgcaagattttctcataac |
4239258 |
T |
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