View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20618_low_9 (Length: 656)

Name: NF20618_low_9
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20618_low_9
NF20618_low_9
[»] chr4 (1 HSPs)
chr4 (27-640)||(3668691-3669314)
[»] chr7 (3 HSPs)
chr7 (517-626)||(26332513-26332622)
chr7 (520-596)||(40471438-40471514)
chr7 (230-260)||(5259200-5259230)
[»] chr3 (1 HSPs)
chr3 (520-597)||(26967051-26967128)
[»] chr5 (1 HSPs)
chr5 (520-596)||(31615352-31615428)
[»] chr1 (4 HSPs)
chr1 (220-262)||(12410855-12410897)
chr1 (220-261)||(44701616-44701657)
chr1 (229-261)||(52623328-52623360)
chr1 (228-262)||(35488052-35488086)
[»] chr2 (2 HSPs)
chr2 (223-262)||(22853385-22853424)
chr2 (229-261)||(22127267-22127299)


Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 27 - 640
Target Start/End: Original strand, 3668691 - 3669314
Alignment:
Q  27 ctatattttttaatattattattttgagcgag-----ttgattgcatttcattaacgataatatgttggatacgagttataatatctataaaatatgaat 121  Q
    ||||||||||||||||||||||||||||| ||     || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||    
T  3668691 ctatattttttaatattattattttgagcaagacatgtttattgcatttcattaacgataatatgttggacacgagttataatatctataaaatgtaaat 3668790  T
Q  122 ccaagttaaaaatgtatccattattgcaagaacatgaaccgttctattgacttgtcttctaataaattgacgtgcgagataaacttaaatgctactatat 221  Q
    |  | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  3668791 ctgaattaaaaatgtgtccattattacaagaacatgaaccgttctattgacttgtcttctaataaattgacatgcgagataaacttaaatgctacaatat 3668890  T
Q  222 aatataaagatattataagatattttctaatattctaacacaaacattgtgttatttattgatgctttggaatatatgcaaatcttgtaat-----ttac 316  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  3668891 gatataaagatattataagatattttctaatattctaacacaaacattgtgttatttattgatgctttggaatatatgcaaatcttgtaatttaatttac 3668990  T
Q  317 taatacttgttcaacttgaacaggaggaaccactaaagacacatgacacattgatattcaatgaatctacaaagcaaacaaatttttcatttgaaggaac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3668991 taatacttgttcaacttgaacaggaggaaccactaaagacacatgacacattgatattcaatgaatctacaaagcaaacaaatttttcatttgaaggaac 3669090  T
Q  417 aacaaaacatgaagcacaaactaactcttcagttcctaattctagttattttaacaacactagtgcttctatgtctataagagaacaaagaaaatcagaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669091 aacaaaacatgaagcacaaactaactcttcagttcctaattctagttattttaacaacactagtgcttctatgtctataagagaacaaagaaaatcagaa 3669190  T
Q  517 gaagatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatga 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669191 gaagatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatga 3669290  T
Q  617 agaagaaagttgaaaggtctttgg 640  Q
    ||||||||||||||||||||||||    
T  3669291 agaagaaagttgaaaggtctttgg 3669314  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 517 - 626
Target Start/End: Complemental strand, 26332622 - 26332513
Alignment:
Q  517 gaagatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcactaatccaatttgctcaatga 616  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||  | ||||||||||||||||| ||||||| |||||||||||    
T  26332622 gaagatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcacgaatccaaattgctcaatga 26332523  T
Q  617 agaagaaagt 626  Q
    ||||||||||    
T  26332522 agaagaaagt 26332513  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 596
Target Start/End: Complemental strand, 40471514 - 40471438
Alignment:
Q  520 gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac 596  Q
    |||||||| || ||||||||||||||| |||| ||||| |||||||| ||  ||||  |||||||||||||||||||    
T  40471514 gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac 40471438  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 5259200 - 5259230
Alignment:
Q  230 gatattataagatattttctaatattctaac 260  Q
    |||||||||||||||||||||||||||||||    
T  5259200 gatattataagatattttctaatattctaac 5259230  T

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Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 520 - 597
Target Start/End: Complemental strand, 26967128 - 26967051
Alignment:
Q  520 gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcact 597  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||    
T  26967128 gatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcact 26967051  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 596
Target Start/End: Complemental strand, 31615428 - 31615352
Alignment:
Q  520 gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac 596  Q
    ||||||||||| ||| ||||||||||| | || ||||| || |||||||||||||| |||||||| ||||| |||||    
T  31615428 gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcac 31615352  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 12410855 - 12410897
Alignment:
Q  220 ataatataaagatattataagatattttctaatattctaacac 262  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  12410855 ataatataaagatagtataaggtattttctaatattctaacac 12410897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 44701616 - 44701657
Alignment:
Q  220 ataatataaagatattataagatattttctaatattctaaca 261  Q
    ||||||| |||||||||||||||||||||| |||||||||||    
T  44701616 ataatatcaagatattataagatattttcttatattctaaca 44701657  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 52623328 - 52623360
Alignment:
Q  229 agatattataagatattttctaatattctaaca 261  Q
    |||||||||||||||||||||||||||||||||    
T  52623328 agatattataagatattttctaatattctaaca 52623360  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 35488052 - 35488086
Alignment:
Q  228 aagatattataagatattttctaatattctaacac 262  Q
    ||||||||||||||||||||||||||||| |||||    
T  35488052 aagatattataagatattttctaatattccaacac 35488086  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 22853385 - 22853424
Alignment:
Q  223 atataaagatattataagatattttctaatattctaacac 262  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  22853385 atataaggatattataagatatattctaatattctaacac 22853424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 22127299 - 22127267
Alignment:
Q  229 agatattataagatattttctaatattctaaca 261  Q
    ||||||||||||||||||| |||||||||||||    
T  22127299 agatattataagatattttataatattctaaca 22127267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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