View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20618_low_96 (Length: 226)
Name: NF20618_low_96
Description: NF20618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20618_low_96 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 19172666 - 19172448
Alignment:
| Q |
8 |
acatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgtt |
107 |
Q |
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| T |
19172666 |
acatcatcatcttcatcatcgacgtcgcgtccattcaaagaatactacacagaatggttcaacacactcaagaacaatcacctcccattactccgtcgtt |
19172567 |
T |
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| Q |
108 |
ctatctccggcgcctccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaaccac |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19172566 |
ctatctccggcgactccttaaccctcctctcaactcacgttgagctcatccaccaacacttccaatcttactaccacaccctcgacgcagctgcaatcac |
19172467 |
T |
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| Q |
208 |
agacccttctcaaatcctc |
226 |
Q |
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||||||||||||||||||| |
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| T |
19172466 |
agacccttctcaaatcctc |
19172448 |
T |
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