View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20619_high_1 (Length: 842)
Name: NF20619_high_1
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 744; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 32 - 823
Target Start/End: Complemental strand, 36813473 - 36812682
Alignment:
| Q |
32 |
agagagagagaataacttcaattatgcatgcactagctttaagattccaagtgatttcgataatatatggccctagctttaagattaggaaaagaaaggc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36813473 |
agagagagagaataacttcaattatgcatgcactagctttaagattccaagtgatttcgataatatatggccctagctttaagattaggaaaagaaaggc |
36813374 |
T |
|
| Q |
132 |
accttactatattcacatgtttcaaaaacattagtctctctgttgcacactgatcgtttagacttttaaatggcaaaatgtcaattcatgaacaagctag |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36813373 |
accttactatattcacatgtttcaaaaacattagtctctttgttgcacactgatcgtttagacttttaaatggcaaaatgtcaattcatgaacaagctag |
36813274 |
T |
|
| Q |
232 |
ctcttagtctttaaagcattttcaaaaataacccgagaaacctgtcgttgaatatttttccacgactccatgtcatcgatcattgtcgttcaatcagatc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36813273 |
ctcttagtctttaaagcattttcaaaaataacccgagaaacctgtcgttgaatatttttccacgactccatgtcatcgatcattgtcgttcaatcagatc |
36813174 |
T |
|
| Q |
332 |
tagctaacagtattcatctcaacaagacaacgatacactcagtatcttagttgtaagtatgaaaaaagtcttgagtttttatttctaaataatatagtcg |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36813173 |
tagctaacagtattcatctcaacaagacaacgatacactcactatcttagttgtaagtatgaaaaaaatcttgagtttttatttctaaataatatagtcg |
36813074 |
T |
|
| Q |
432 |
atcgtcgttgaaatttctgattgattttaattactagtcaacggt-ggatcacctatgttatcaacatatatgtttttctcaccatatgtccgaagtagc |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36813073 |
atcgtcgttgaaatttctgattgattttaattactagtcaacggtgggatcacctatgttatcaacatatatgtttttctcaccatatgtccgaagtagc |
36812974 |
T |
|
| Q |
531 |
atgtcgatccnnnnnnncgtacatttccttacttggctgaaaaagtatccaaaaactaagatattttactaacaaaacgatcaatataattatttgacgc |
630 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36812973 |
atgtcgatccaaaaaaacgtacatttccttacttggctgaaaaagtatccaaaaactaagatattttactaacaaaacgatcaatataatt-tttgacgc |
36812875 |
T |
|
| Q |
631 |
gagagaagtgctagcaagaccaaaagcgtattttattgccaatcctcttcaacattcacagaaggatgagaggacaccctatgctagttttctttcattt |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36812874 |
gagagaagtgctagcaagaccaaaagcgtattttattgccaatcctcttcaacattcacagaaggatgagaggacaccctatgctagttttctttcattt |
36812775 |
T |
|
| Q |
731 |
tgaactaaccggtttcaacgaggctgataaatacatccatcaaagaaaagctctatatgttaaggtgtttgtacataacttcaacgagtggat |
823 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36812774 |
tgaactaaccggtttcaacgaggctgataaatacatccatcaaagaaaagctctatatgttaaggtgtttgtacataacttcaacgagtggat |
36812682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 9176797 - 9176841
Alignment:
| Q |
557 |
ccttacttggctgaaaaagtatccaaaaactaagatattttacta |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
9176797 |
ccttacttggctgaaaaagtatccaaaaactatgatctttcacta |
9176841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 7107085 - 7107014
Alignment:
| Q |
376 |
tcttagttgtaagtatgaaaaaagtcttgagtttttatttctaaataatatagtcgatcgtcgttgaaattt |
447 |
Q |
| |
|
|||||||||||||||||| ||| ||| | ||| |||||||| |||||||| || | ||||||||||||||| |
|
|
| T |
7107085 |
tcttagttgtaagtatgagaaatgtcataagtcattatttctgaataatatcgttggtcgtcgttgaaattt |
7107014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University