View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_high_14 (Length: 424)
Name: NF20619_high_14
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 42959215 - 42958808
Alignment:
| Q |
17 |
agataggtccaatttctttactatgacgaaagacataaagcagggagattcaatctctccttatccttttgtcatgtgtatagataggctttccaattta |
116 |
Q |
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| T |
42959215 |
agataggtccaatttctttactatgaccaaagacataaaggagggagattcaatctctccttatccttttgtcgtgtgtatagataggctttccaattta |
42959116 |
T |
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| Q |
117 |
ataccggaggttgtgtcaaaacggtgagcaaaaggtgttgagagctcgtataaatagaacattagtgtcacgtctcatgtttgtcaatgattttattatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42959115 |
ataccggaggttgtgtcaaaacggtgagcaaaaggtgttgagagctcgtaaaaatagaacgttagtgtcacgtctcatgtttgtcaatgattttattatt |
42959016 |
T |
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| Q |
217 |
atttggtcaagctactgaagatcaaatacaatgtgtggtggaaattatacaaagnnnnnnnnnttgttccatgtctatgcaaaaagggaacaatgagaag |
316 |
Q |
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| T |
42959015 |
atttggtcaacctattgaagatcaaatacaatgtgtggtggaaattatacaaagaaaaaaaaattgttccatgtctatgcaagaagggaacaatgagaaa |
42958916 |
T |
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| Q |
317 |
aattgtatgttgtttgtgaagcatgtgaataggagtaccagacttcagtttgtccacgtgtttgattatcaagaaactaataattttataaagtatatcg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42958915 |
aattgtatgttgtttgtgaagcatgtgaataggagtaccagacttcagtttgtccacgtgtttgattatcaagaaactaataattttataaagtatatcg |
42958816 |
T |
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| Q |
417 |
aagttcat |
424 |
Q |
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| T |
42958815 |
aagttcat |
42958808 |
T |
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