View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_high_18 (Length: 373)

Name: NF20619_high_18
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20619_high_18
NF20619_high_18
[»] chr3 (14 HSPs)
chr3 (14-259)||(38250886-38251130)
chr3 (307-355)||(48626778-48626826)
chr3 (308-355)||(28132484-28132531)
chr3 (308-355)||(43905603-43905650)
chr3 (308-355)||(6715706-6715753)
chr3 (318-356)||(1649601-1649639)
chr3 (309-355)||(25598833-25598879)
chr3 (308-355)||(13401725-13401772)
chr3 (308-355)||(51147205-51147252)
chr3 (309-355)||(7767333-7767379)
chr3 (309-355)||(21784531-21784577)
chr3 (309-355)||(40151883-40151929)
chr3 (307-355)||(27303454-27303502)
chr3 (311-355)||(46905009-46905053)
[»] chr2 (13 HSPs)
chr2 (308-355)||(17117395-17117442)
chr2 (310-355)||(21746983-21747028)
chr2 (312-355)||(15457769-15457812)
chr2 (308-355)||(18915799-18915846)
chr2 (305-355)||(41096286-41096336)
chr2 (310-355)||(38985461-38985505)
chr2 (307-355)||(1226016-1226064)
chr2 (309-355)||(18172694-18172739)
chr2 (308-355)||(19367174-19367221)
chr2 (308-355)||(26151497-26151544)
chr2 (305-355)||(2064072-2064122)
chr2 (322-355)||(6530929-6530962)
chr2 (307-355)||(4856260-4856308)
[»] chr7 (9 HSPs)
chr7 (307-355)||(26282281-26282329)
chr7 (309-355)||(1366276-1366322)
chr7 (308-355)||(33910332-33910379)
chr7 (308-355)||(44875909-44875956)
chr7 (309-355)||(40001462-40001508)
chr7 (314-355)||(4100228-4100269)
chr7 (308-355)||(25610331-25610378)
chr7 (308-355)||(29730839-29730886)
chr7 (308-355)||(29742061-29742108)
[»] chr6 (9 HSPs)
chr6 (307-355)||(31861254-31861302)
chr6 (308-355)||(29308217-29308264)
chr6 (313-355)||(1092796-1092838)
chr6 (314-355)||(1690473-1690514)
chr6 (308-352)||(31258321-31258365)
chr6 (308-355)||(2618620-2618667)
chr6 (316-355)||(22504011-22504050)
chr6 (307-355)||(11088836-11088884)
chr6 (311-355)||(29401406-29401450)
[»] chr5 (15 HSPs)
chr5 (307-355)||(3349478-3349526)
chr5 (311-355)||(10591028-10591072)
chr5 (308-355)||(43511888-43511935)
chr5 (309-355)||(13424132-13424178)
chr5 (314-351)||(42291636-42291673)
chr5 (307-355)||(17513685-17513733)
chr5 (316-355)||(20976249-20976288)
chr5 (308-355)||(29156456-29156503)
chr5 (311-355)||(12661575-12661619)
chr5 (311-355)||(41612990-41613034)
chr5 (308-355)||(13474898-13474945)
chr5 (308-355)||(37047050-37047097)
chr5 (309-355)||(931636-931682)
chr5 (308-355)||(5829649-5829698)
chr5 (308-342)||(23069474-23069508)
[»] chr8 (10 HSPs)
chr8 (313-355)||(34523709-34523751)
chr8 (312-355)||(12531828-12531871)
chr8 (308-355)||(39697695-39697742)
chr8 (308-356)||(18420355-18420403)
chr8 (312-355)||(3574849-3574892)
chr8 (308-355)||(13585573-13585620)
chr8 (308-355)||(3445800-3445847)
chr8 (320-354)||(3471867-3471901)
chr8 (313-355)||(42951549-42951591)
chr8 (315-355)||(44664360-44664400)
[»] chr4 (9 HSPs)
chr4 (308-355)||(51066061-51066108)
chr4 (312-355)||(55134476-55134519)
chr4 (306-355)||(53011982-53012031)
chr4 (312-355)||(29221377-29221420)
chr4 (309-355)||(41038519-41038565)
chr4 (308-355)||(34982492-34982539)
chr4 (309-355)||(11681492-11681538)
chr4 (309-355)||(11689771-11689817)
chr4 (322-355)||(23256864-23256897)
[»] chr1 (9 HSPs)
chr1 (308-355)||(51109848-51109895)
chr1 (310-354)||(12971674-12971718)
chr1 (308-354)||(6150991-6151037)
chr1 (308-352)||(20470884-20470928)
chr1 (308-355)||(20905035-20905082)
chr1 (312-355)||(28885424-28885467)
chr1 (308-355)||(42740372-42740419)
chr1 (307-355)||(30004656-30004704)
chr1 (315-355)||(30899932-30899972)
[»] scaffold0564 (1 HSPs)
scaffold0564 (308-354)||(1330-1376)
[»] scaffold0181 (1 HSPs)
scaffold0181 (322-355)||(16897-16930)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 38250886 - 38251130
Alignment:
Q  14 aggtatggctaaaaactagaaatcttgcacacgacaaaatctttgacgaacaaactgtacatgaagaaaagactacactaattgaagacggaggttggag 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38250886 aggtatggctaaaaactagaaatcttgcacacgacaaa-tctttgacgaacaaactgtacatgaagaaaagattacactaattgaagacggaggttggag 38250984  T
Q  114 catcaaacaaagataagtggaaatgttaagggtctatatgtcaaaggaaaatcagataagaagggtcgcaatggcaagaacaaacaaaagagcaaaacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38250985 catcaaacaaagataagtggaaatgttaagggtctatatgtcaaaggaaaatcagataagaagggtcgcaatggcaagaacaaacaaaagagcaaaacaa 38251084  T
Q  214 ctaccaagaaaagttgttacttctgtcacaaggaaggccacttcag 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38251085 ctaccaagaaaagttgttacttctgtcacaaggaaggccacttcag 38251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 48626778 - 48626826
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  48626778 acaggaccgtccctatgaaataggaggctcggttctctatttaaaatag 48626826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 28132484 - 28132531
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  28132484 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatag 28132531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 43905603 - 43905650
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  43905603 cagggtcgtccctatgaaataggaggctcgactctctatttaaaatag 43905650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 6715753 - 6715706
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  6715753 cagggccgtccccgtgaaataggaggctcggctctctttttaaaatag 6715706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 1649601 - 1649639
Alignment:
Q  318 cctatgaaataggaggctcggctctctatttaaaatagt 356  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  1649601 cctatgaaatgggaggctcggctctctatttaaaatagt 1649639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 25598833 - 25598879
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  25598833 agggccgttcctataaaataggaggctcggctctctttttaaaatag 25598879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 13401772 - 13401725
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||| | |||||||||||||| |||||| ||||||||||    
T  13401772 cagggccgtccctgtaaaataggaggctcgactctctttttaaaatag 13401725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 51147252 - 51147205
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  51147252 cagggccgttcctatgaaataggaggctcggttctatttttaaaatag 51147205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 7767379 - 7767333
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  7767379 agggccgttcctatgaaataggaggctcggttctatttttaaaatag 7767333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 21784531 - 21784577
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||| |||||||||||| ||| |||||| ||||||||||    
T  21784531 agggccgtccctctgaaataggaggttcgactctctttttaaaatag 21784577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 40151883 - 40151929
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  40151883 agggtcgttcctatgaaataggaggctcgactctctttttaaaatag 40151929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 27303502 - 27303454
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||| || |||||||||||||||||| ||| | ||||||||||    
T  27303502 acagggccgttccaatgaaataggaggctcggttctatttttaaaatag 27303454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 46905053 - 46905009
Alignment:
Q  311 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||| ||||||||||||||||||||| ||| | ||||||||||    
T  46905053 ggccgttcctatgaaataggaggctcggttctatttttaaaatag 46905009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 17117395 - 17117442
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17117395 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 17117442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 21746983 - 21747028
Alignment:
Q  310 gggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21746983 gggccgtccctatgaaataggaggctcggctctctatttaaaatag 21747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 15457812 - 15457769
Alignment:
Q  312 gccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15457812 gccgtccctatgaaataggaggctcggctctctatttaaaatag 15457769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 18915799 - 18915846
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18915799 cagggccgtccctataaaataggaggctcggctctctatttaaaatag 18915846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 41096286 - 41096336
Alignment:
Q  305 acacagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  41096286 acacagggccgtccctgtgaaataggaggctcggctctctttttaaaatag 41096336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 38985461 - 38985505
Alignment:
Q  310 gggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  38985461 gggccgtccctatgaaatag-aggctcggctctctatttaaaatag 38985505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 1226016 - 1226064
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  1226016 acagggccgttcctatgaaataggaggctcgactctctttttaaaatag 1226064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 18172694 - 18172739
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  18172694 agggccgtccctatgaaatag-aggttcggctctctatttaaaatag 18172739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 19367174 - 19367221
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||||||    
T  19367174 cagggccgtccctgtgaaataggaggcttgactctctttttaaaatag 19367221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 26151497 - 26151544
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||||    
T  26151497 cagggccgtccccgtgaaataggaggcttggctctctttttaaaatag 26151544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 2064122 - 2064072
Alignment:
Q  305 acacagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||| ||| |||||||||||||||  |||||| ||||||||||    
T  2064122 acacagggccgttcctgtgaaataggaggctcaactctctttttaaaatag 2064072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 6530962 - 6530929
Alignment:
Q  322 tgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||| ||||||||||    
T  6530962 tgaaataggaggctcggctctctttttaaaatag 6530929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 4856308 - 4856260
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||| ||||||  |||||||||||||||| |||||| ||||||||||    
T  4856308 acagggtcgtccccgtgaaataggaggctcgactctctttttaaaatag 4856260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 26282281 - 26282329
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26282281 acagggccgtccctatgaaataggaggctcggctcactatttaaaatag 26282329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 1366322 - 1366276
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  1366322 agggccgtccctatgaaatagaaggctcggctctctatttaaaatag 1366276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 33910379 - 33910332
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  33910379 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatag 33910332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 44875909 - 44875956
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  44875909 cagggccgtccctatgaaataggaggctcgactctctttttaaaatag 44875956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 40001462 - 40001508
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  40001462 agggccgtctctatgaaataggaggttcgactctctatttaaaatag 40001508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 4100269 - 4100228
Alignment:
Q  314 cgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  4100269 cgtccctatgaaataggaggttcggctctctttttaaaatag 4100228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 25610378 - 25610331
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||| ||||| |||| ||| |||||||||||||||||    
T  25610378 cagggccgtccctataaaataagaggttcgactctctatttaaaatag 25610331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 29730839 - 29730886
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  29730839 cagggtcgttcctatgaaataggaggctcgactctctttttaaaatag 29730886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 29742108 - 29742061
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||| |||||||||||||||||||| |||||| ||||||||||    
T  29742108 cagggtcgttcctatgaaataggaggctcgactctctttttaaaatag 29742061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 31861302 - 31861254
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31861302 acagggccgtccctatgaaataggaggctcgactctctatttaaaatag 31861254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 29308217 - 29308264
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  29308217 cagggccgtccccatgaaataggaggctcggctctctatttaaaatag 29308264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 1092796 - 1092838
Alignment:
Q  313 ccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  1092796 ccgtccctatgaaataggaggctcggttctctatttaaaatag 1092838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 1690473 - 1690514
Alignment:
Q  314 cgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  1690473 cgtctctatgaaataggaggctcggctctctatttaaaatag 1690514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 31258321 - 31258365
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaa 352  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||    
T  31258321 cagggccgtccccgtgaaataggaggctcggctctctttttaaaa 31258365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 2618667 - 2618620
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  2618667 cagggccgtccatgtgaaataggaggttcggctctctttttaaaatag 2618620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 22504050 - 22504011
Alignment:
Q  316 tccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  22504050 tccctatgaaataggaggctcggttctctttttaaaatag 22504011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 11088884 - 11088836
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||  ||||||||||||||||||  |||||| ||||||||||    
T  11088884 acagggccgtttctatgaaataggaggctcaactctctttttaaaatag 11088836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 29401450 - 29401406
Alignment:
Q  311 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||  |||||||||||||||| |||||| ||||||||||    
T  29401450 ggccgtccccgtgaaataggaggctcgactctctttttaaaatag 29401406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 3349478 - 3349526
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3349478 acaggaccgtccctatgaaataggaggctcggctctctatttaaaatag 3349526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 10591028 - 10591072
Alignment:
Q  311 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10591028 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 10591072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 43511935 - 43511888
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43511935 cagggtcgtccctatgaaataggaggctcggctctctatttaaaatag 43511888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 13424178 - 13424132
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  13424178 agggccgtccctgtgaaataggaggctcggctctctttttaaaatag 13424132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 42291636 - 42291673
Alignment:
Q  314 cgtccctatgaaataggaggctcggctctctatttaaa 351  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42291636 cgtccctatgaaataggaggctcggctctctatttaaa 42291673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 17513685 - 17513733
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  17513685 acagggccgtccctatgtaataggaggctcgactctctatttataatag 17513733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 20976288 - 20976249
Alignment:
Q  316 tccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  20976288 tccctgtgaaataggaggctcggctctctatttaaaatag 20976249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 29156503 - 29156456
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  29156503 cagggtcgtccctataaaataggaagctcggctctctatttaaaatag 29156456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 12661619 - 12661575
Alignment:
Q  311 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||    
T  12661619 ggccgtccctgtgaaatgggaggctcggctctctttttaaaatag 12661575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 41613034 - 41612990
Alignment:
Q  311 ggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||    
T  41613034 ggccgttcctatgaaataggaggctctgctctctttttaaaatag 41612990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 13474945 - 13474898
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||||    
T  13474945 cagggccgtccccgtgaaataggaggctcgactctctttttaaaatag 13474898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 37047097 - 37047050
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||    
T  37047097 cagggccgtccccgtgaaataggaggttcggctctctttttaaaatag 37047050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 931682 - 931636
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||| ||| |||||||||||||||| |||||||||| ||||||||||    
T  931682 agggtcgttcctatgaaataggaggttcggctctctttttaaaatag 931636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 5829698 - 5829649
Alignment:
Q  308 cagggccgtccctatgaaata--ggaggctcggctctctatttaaaatag 355  Q
    ||||||||||| |||||||||  |||||||||||||| ||||||||||||    
T  5829698 cagggccgtccttatgaaatataggaggctcggctctttatttaaaatag 5829649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 23069508 - 23069474
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctct 342  Q
    |||||||||||||||||||||||||||||| ||||    
T  23069508 cagggccgtccctatgaaataggaggctcgactct 23069474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 34523709 - 34523751
Alignment:
Q  313 ccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34523709 ccgtccctatgaaataggaggctcggctctctatttaaaatag 34523751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 12531871 - 12531828
Alignment:
Q  312 gccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  12531871 gccgtccctatgaaataggaggcttggctctctatttaaaatag 12531828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 39697695 - 39697742
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  39697695 cagggccgtccctatgaaataggaggcttgggtctctatttaaaatag 39697742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 18420355 - 18420403
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagt 356  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  18420355 cagggtcgtccctgtgaaataggaggctcggctctctttttaaaatagt 18420403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 3574849 - 3574892
Alignment:
Q  312 gccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| |||||||||||||||||||| |||||||||||||||||    
T  3574849 gccgttcctatgaaataggaggctcgactctctatttaaaatag 3574892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 13585620 - 13585573
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  13585620 cagggccgtccctgtgaaataggaggctcgactctctttttaaaatag 13585573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 3445847 - 3445800
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||||||    
T  3445847 caggaccgtccctgtgaaataggaggctcgactctctttttaaaatag 3445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 3471901 - 3471867
Alignment:
Q  320 tatgaaataggaggctcggctctctatttaaaata 354  Q
    ||||||||||||||||||||||||| |||||||||    
T  3471901 tatgaaataggaggctcggctctctttttaaaata 3471867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 42951549 - 42951591
Alignment:
Q  313 ccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||| | ||||||||||||||||||||||| ||||||||||    
T  42951549 ccgtccttgtgaaataggaggctcggctctctttttaaaatag 42951591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 44664360 - 44664400
Alignment:
Q  315 gtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||| ||||||||| ||||||||||||| ||||||||||    
T  44664360 gtccctgtgaaataggtggctcggctctctttttaaaatag 44664400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 51066061 - 51066108
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  51066061 cagggacgtccctatgaaataggaggctcggttctctatttaaaatag 51066108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 55134519 - 55134476
Alignment:
Q  312 gccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  55134519 gccgtccctatgaaatatgaggctcggctctctatttaaaatag 55134476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 53012031 - 53011982
Alignment:
Q  306 cacagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  53012031 cacagggccgttcctgtgaaataggaggctcggctctctttttaaaatag 53011982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 29221377 - 29221420
Alignment:
Q  312 gccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||    
T  29221377 gccgtccctgtgaaataggaggctcggctctctttttaaaatag 29221420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 41038565 - 41038519
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||||    
T  41038565 agggccgtcccggtgaaataggaggctcggctctctttttaaaatag 41038519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 34982539 - 34982492
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||||||||| ||||||||||||||| |||||||| |||||||    
T  34982539 cagggtcgtccctataaaataggaggctcggttctctattgaaaatag 34982492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 11681492 - 11681538
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||||    
T  11681492 agggccgtccccgtgaaataggaggctcgactctctttttaaaatag 11681538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 11689771 - 11689817
Alignment:
Q  309 agggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||||    
T  11689771 agggccgtccccgtgaaataggaggctcgactctctttttaaaatag 11689817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 23256897 - 23256864
Alignment:
Q  322 tgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||| ||||||||||    
T  23256897 tgaaataggaggctcggctctctttttaaaatag 23256864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 51109848 - 51109895
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  51109848 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatag 51109895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 12971718 - 12971674
Alignment:
Q  310 gggccgtccctatgaaataggaggctcggctctctatttaaaata 354  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  12971718 gggctgtccctataaaataggaggctcggctctctatttaaaata 12971674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 6151037 - 6150991
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaata 354  Q
    ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  6151037 cagggccgtccctgtgaaataggaggctcgactctctttttaaaata 6150991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 20470928 - 20470884
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaa 352  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||    
T  20470928 cagggccgtccccgtgaaataggaggctcggctctctttttaaaa 20470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 20905035 - 20905082
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| ||||||| |||||||||||||||| |||||| ||||||||||    
T  20905035 cagggtcgtccctgtgaaataggaggctcgactctctttttaaaatag 20905082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 28885424 - 28885467
Alignment:
Q  312 gccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||    
T  28885424 gccgtccatatgaaataggaggctcgactctctttttaaaatag 28885467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 42740419 - 42740372
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  42740419 cagggccgttcctatgaaataggaggctcggttctatttttaaaatag 42740372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 30004656 - 30004704
Alignment:
Q  307 acagggccgtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||| |||||| | | ||||||||||||||||||||| ||||||||||    
T  30004656 acaggaccgtccatgtaaaataggaggctcggctctctttttaaaatag 30004704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 30899972 - 30899932
Alignment:
Q  315 gtccctatgaaataggaggctcggctctctatttaaaatag 355  Q
    |||||| |||||||||||| |||||||||| ||||||||||    
T  30899972 gtccctgtgaaataggaggttcggctctctttttaaaatag 30899932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 1376 - 1330
Alignment:
Q  308 cagggccgtccctatgaaataggaggctcggctctctatttaaaata 354  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||    
T  1376 cagggccgtccccgtgaaataggaggctcggctctctttttaaaata 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 16897 - 16930
Alignment:
Q  322 tgaaataggaggctcggctctctatttaaaatag 355  Q
    ||||||||||||||||||||||| ||||||||||    
T  16897 tgaaataggaggctcggctctctttttaaaatag 16930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University