View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_high_24 (Length: 321)
Name: NF20619_high_24
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 27610532 - 27610220
Alignment:
| Q |
1 |
aggaaatccagcagatatgtgagagacatggaaaggaactatatggatcacaataataacaatgttttgccccagagttcccacgtcagggtgcatgttg |
100 |
Q |
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| T |
27610532 |
aggaaatccagcagatatgtgagagacatggaaaggaactatatggatcacaataataacaatgttttgccccagagttcccacgtcagggtgcatgttg |
27610433 |
T |
|
| Q |
101 |
atcagagaaatgatcaaatcagggtccacgatggtctgaaagttgatccttcaaagcatctaagcaagtataataacttgctaaaagctgggaggtaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27610432 |
atcagagaaatgatcaaatcagggtccacgatggtctgaaagttgatccttcaaagcatctaagcaagtataataacttgctaaaagctgggaggtaccc |
27610333 |
T |
|
| Q |
201 |
caatgaacgccaaagaacataaaagtgtccttagataaatcttataagaattttataaatgtagcaaatttgcttcgaatgaaacaatgttgtcaaactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27610332 |
caatgaacgccaaagaacataaaagtgtccttagataaatcttataagaattttataaatgtagcaaatttgcttcgaatgaaacaatgttgtcaaactc |
27610233 |
T |
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| Q |
301 |
ctcccttcatctc |
313 |
Q |
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||||||||||||| |
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| T |
27610232 |
ctcccttcatctc |
27610220 |
T |
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