View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20619_high_29 (Length: 306)
Name: NF20619_high_29
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_high_29 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 41952467 - 41952709
Alignment:
| Q |
43 |
atatatattagtctttttgtggagcggttcgaaaccttaataaaaagcaattagccagagaatcaatctactgtcccttcttcgtagtagctcatatgca |
142 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41952467 |
atatatattaatctttttgtgaagcggttcgaaaccttaataaaaagcaattagccagagaatcaatctactgtcccttcttcgtagtagctcatatgca |
41952566 |
T |
|
| Q |
143 |
tgctagccaaaattgctacatgcaccatcgtgaggttacggcctcgaagaccccataaagggacccatccctcggacgtggaacgctgaaaaactaaaga |
242 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41952567 |
tgctagccaaaattgctccatgcaccatcgtgaggttacggcctcgaagaccccataaagggacccatccctcggacgtggaacgctgaaaaactaaaga |
41952666 |
T |
|
| Q |
243 |
ggtactataattgaaattaacaagtaaagcccttgaacctcct |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41952667 |
ggtactataattgaaattaacaagtaaagcccttgaacctcct |
41952709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 16274334 - 16274271
Alignment:
| Q |
183 |
gcctcgaagaccccataaagggacccatccctcggacgtggaacgctgaaaaactaaagaggta |
246 |
Q |
| |
|
|||||||||||| |||||| ||| |||| ||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
16274334 |
gcctcgaagacctcataaaaggagccattcctaggacgtggaacgcagaaaaacttaaaaggta |
16274271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0145 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 28494 - 28557
Alignment:
| Q |
183 |
gcctcgaagaccccataaagggacccatccctcggacgtggaacgctgaaaaactaaagaggta |
246 |
Q |
| |
|
|||||||||||| |||||| ||| |||| ||| ||||||||||||| |||||||| || ||||| |
|
|
| T |
28494 |
gcctcgaagacctcataaaaggagccattcctaggacgtggaacgcagaaaaacttaaaaggta |
28557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University