View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_high_32 (Length: 276)
Name: NF20619_high_32
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 99 - 272
Target Start/End: Original strand, 39029172 - 39029345
Alignment:
| Q |
99 |
taaatgaacccaacacaatctacgctatcaatgattatacgttagattaccttcgttgacaatgtaaatgtgtacgtttaatacctaaggtaatatatac |
198 |
Q |
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| T |
39029172 |
taaatgaacccaacacaatttacgctatcaatgattatacgttagattacattcgttggcaatgtaaatgtgtacgtttaatacctaaggtaatatatac |
39029271 |
T |
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| Q |
199 |
ttcaattcgttgacaatgcaaatacttatcataatgattgaactccagctaacaacgtttctttcttctcactc |
272 |
Q |
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| T |
39029272 |
ttcaattcgttgacaatgcaaatacttatcataatgattgaactccatctaacagcgtttctttctactcactc |
39029345 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 39029063 - 39029160
Alignment:
| Q |
14 |
caggtttaatatttcaattcgttgaaatgcatatgctatatagtatgctattgtaaattgataatgccatacgtataatagttgctaaatgaacccaaca |
113 |
Q |
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| T |
39029063 |
caggtttaatacttcaattcgttgaaatgcatatgctata--gtatgctattgtaaattgataatgccatacgtatgatagttgctaattgaacccaaca |
39029160 |
T |
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