View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20619_high_33 (Length: 275)

Name: NF20619_high_33

Description: NF20619

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20619_high_33

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 69; E-Value: 5e-31

Query Start/End: Original strand, 1 - 77

Target Start/End: Original strand, 21569787 - 21569863

Alignment:

Q	1	ttgatattttatattatggagaatccaattaatttgtgactaatgcaattcacatattgtattagaacttagaagac	77	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21569787	ttgatattttatattgtggaaaatccaattaatttgtgactaatgcaattcacatattgtattagaacttagaagac	21569863	T

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Target: chr8; HSP #2

Raw Score: 57; E-Value: 7e-24

Query Start/End: Original strand, 116 - 260

Target Start/End: Original strand, 21569905 - 21570049

Alignment:

Q	116	aatggttcacatattatattagttgannnnnnnatgaaattttgttatctaaggtcataaaa-atggtttattagaaagaattgcaccagatgannnnnn	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	21569905	aatggttcacatattatattagttgatttttt-atgaaattttgttatctaaggtcataaaaaatggtttattagaaagaattgcaacagatgatttttt	21570003	T

Q	215	nnnnnnnnnnnaaatatataagcaaaataattgtaattaaggagag	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21570004	gtttagtttttaaatatataagcaaaataattgtaattaaggagag	21570049	T

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