View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20619_high_4 (Length: 716)
Name: NF20619_high_4
Description: NF20619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20619_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 395 - 684
Target Start/End: Original strand, 45545540 - 45545829
Alignment:
| Q |
395 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
494 |
Q |
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| T |
45545540 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
45545639 |
T |
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| Q |
495 |
tgaaagttgctaacaaaaatttcaaaactgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
594 |
Q |
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| T |
45545640 |
tgaaagttgctaacaaaaatttcaaaactgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
45545739 |
T |
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| Q |
595 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttacgtgaataagtctgagcttgttggtgagtgtttgttaga |
684 |
Q |
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| T |
45545740 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttatgtgaataagtctgagcttgttggtgagtgtttgttaga |
45545829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 112 - 320
Target Start/End: Original strand, 45545249 - 45545457
Alignment:
| Q |
112 |
caatggcgtttcagttctgctcctgcgagattggccatgactcgtagagtgcgtcctcttgtttcactgaatccttatatgggtggttggacaattaagg |
211 |
Q |
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| T |
45545249 |
caatggcgtttcagttctgctcctgcgagattggccatgacccgtagagtgcgtcctcttgtttcactgaatccttatatgggtggttggacaattaagg |
45545348 |
T |
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| Q |
212 |
tcagtgtcacaagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgaccgatgaagatgtaaggaacag |
311 |
Q |
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| T |
45545349 |
tcagtgtcacaagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatgtaaggaacag |
45545448 |
T |
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| Q |
312 |
gatatttga |
320 |
Q |
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| T |
45545449 |
aatatttga |
45545457 |
T |
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